Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 612 a.a., protein translocase subunit SecD from Vibrio cholerae E7946 ATCC 55056

 Score =  286 bits (732), Expect = 3e-81
 Identities = 175/512 (34%), Positives = 287/512 (56%), Gaps = 52/512 (10%)

Query: 34  PDWLPQ---NRITLGLDLQGGSHLLLAVDMPAVIHDRLETMLESVRTNLRKDSLRYTGLA 90
           P WL     + I LGLDL+GG   LL VD+     ++ ++M+++V+ +LR + LR  G+ 
Sbjct: 121 PKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLR--GVV 178

Query: 91  VRDRSVVFTLASADDIETARGALAPLVQPDEPGKPADYGLTFDGLTGRIALADSGVQAWA 150
           V+          A +++T +      V+         + +       ++  +      + 
Sbjct: 179 VQAMG-----NDAFEVKTEQPQALSHVRKYLQENYRGWEIRQGSDQLQVQPSQQNKSEFQ 233

Query: 151 DKAAQQSIEIVRRRIDETGVNEPMIARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHM 210
               QQ+++I+R RI+E G+ E ++ RQG   I ++LPGV DP + K ++G TA + F+ 
Sbjct: 234 TATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGATASLAFYE 293

Query: 211 V---------GDRALGDGSVPAGYRLLPSADPARPGEKILVSRKVEVDGSHLTDAKPSFD 261
                      D  L DG+                G  ++++++  + G H+ +A+   D
Sbjct: 294 AKSPTDARSYDDLILEDGN----------------GRPVILAKRPVLSGEHIVNARAGVD 337

Query: 262 QQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL-------------DDKVVSAPVIR 308
              G   V+ S D  G +  +D +   +GKP A V               +KV+S   I+
Sbjct: 338 NM-GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQ 396

Query: 309 EPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGADSIRAGMIAIS 368
             + G + +I+G+ +   A  LA+LLRAG+L AP+T+VEERT+G  LG ++I  G  A++
Sbjct: 397 SQL-GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALA 455

Query: 369 VGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQ-ATLTLPGIAGLLLSLGMAV 427
           +G  + + +M ++Y   GW ANVAL+ N+A  LG ++L+  A LTLPGIAGL+L++GMAV
Sbjct: 456 LGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAV 515

Query: 428 DANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILFSIGVGTIRGF 487
           D N+LI ERIR++  +GR  A +++TGF  AF+TI D+NITT+I   IL+SIG G I+GF
Sbjct: 516 DTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGF 575

Query: 488 AVTISLGIIVSMFTAITVTR-LLMVIWFRRTK 518
           A+T+ LG++ SMF+ +  +R L+ ++W R T+
Sbjct: 576 ALTLGLGLLTSMFSGVFASRALINLVWGRDTR 607