Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 844 a.a., preprotein translocase subunit SecD/SecF from Sinorhizobium meliloti 1021

 Score =  756 bits (1952), Expect = 0.0
 Identities = 400/822 (48%), Positives = 549/822 (66%), Gaps = 10/822 (1%)

Query: 5   SKAKTIAIIAVCLIGLLLALPNAFKHG---SLPDWLPQNRITLGLDLQGGSHLLLAVDMP 61
           S+   +A +A+ + G L ALP+         +   LP   +TLGLDL+GGSHL+L VD  
Sbjct: 4   SRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEVDGA 63

Query: 62  AVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLVQPDE 121
            +   RL ++L+  R  LR + +  +   +   SV  ++  A D +     L  L  P  
Sbjct: 64  GLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSIPDAQDRDKVLPKLQELATPVS 123

Query: 122 P---GKPA-DYGLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPMIAR 177
                 PA +  +T  G    +A+ ++G+     KA +QS+EI+R R+D+ GV EP+I R
Sbjct: 124 TVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPLIQR 183

Query: 178 QGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPG 237
            G++RILVQLPG+ DP R++ LLG TA+M+FHM+          P G  +LP A+    G
Sbjct: 184 IGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGAND---G 240

Query: 238 EKILVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL 297
            +  V  +V + G  L DAK  FDQ+  Q VV FSFD  GAR+FAD+T+  VG+PFAIVL
Sbjct: 241 NRYPVESRVAISGERLDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVL 300

Query: 298 DDKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGA 357
           D KV++APVI EPI GGRGQISGSFT   A  L+ LLR+GALPAPLT++EER+VGP+LG+
Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360

Query: 358 DSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIA 417
           DSIR G+     GF LVV  M + YG +G  ANV LV +  +T+G L L+ +TLTLPGIA
Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIA 420

Query: 418 GLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILF 477
           G++L +GMAVDANILIN RIREE + G G   +++ GF +A+ATI DSN+TTL    +LF
Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480

Query: 478 SIGVGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANHFRLVPDHTKI 537
             G G ++GFAVT+ LGI +SMFT++TV RLLM     R K K L + + F  VP     
Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKLEIPSLFGKVPQLPTF 540

Query: 538 AFMRGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDLQS 597
           +FM+GR L +G S  LS++SV+LFF PGLNYG+DF GG  +E  S+  ++ P LR  L+ 
Sbjct: 541 SFMKGRFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSLEE 600

Query: 598 LPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVGAS 657
           L +G V LQ FG    VLIR++RQ GG+ AQ   + +V+  +     G+ + R + VG +
Sbjct: 601 LNLGEVALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVGPT 660

Query: 658 VSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQFNL 717
           VS EL + G +A+ LA +A+L+YIWFRFEW F VGA+  +LLD+TKTVGFFA+TG+ FNL
Sbjct: 661 VSGELARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDFNL 720

Query: 718 TAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLGRTVGTSLATFL 777
           TAIAA+LT++GYS+NDKVVVYDR+RENLR Y++MP   LID SIN+ + R + TS AT L
Sbjct: 721 TAIAALLTMIGYSVNDKVVVYDRMRENLRKYKSMPFSDLIDMSINQVIARCIFTSAATAL 780

Query: 778 AIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLL 819
           +++P+A++GGEA++ FA  ++FGV++AT+SS++I  P+LL L
Sbjct: 781 SLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFL 822