Pairwise Alignments

Query, 853 a.a., SecD export membrane protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 532 a.a., protein translocase subunit secD from Caulobacter crescentus NA1000

 Score =  429 bits (1102), Expect = e-124
 Identities = 239/535 (44%), Positives = 337/535 (62%), Gaps = 14/535 (2%)

Query: 1   MLYFSKAKTIAIIAVCLIGLLLALPNAFKHGSL---PDWLPQNRITLGLDLQGGSHLLLA 57
           ML  S+ K + +    + G+L  LPN     +L   PDWLP+ ++ LGLDLQGGS+L+  
Sbjct: 1   MLTLSRWKIVLVTFSVIFGILFTLPNLLPQKTLDSFPDWLPKQKLNLGLDLQGGSYLMYE 60

Query: 58  VDMPAVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETARGALAPLV 117
           VD  A+  +RL+ ++E VRT LR + + +  LA  + +V   +A A  ++ A   L   V
Sbjct: 61  VDTDALRKERLKNLVEDVRTVLRGEQITFGELAEVNGTVRLRIADAAKVDEAANLLRRSV 120

Query: 118 QPDEPGKPADYGLTFDGLTGR---IALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPM 174
                G  +   ++ D    +   ++         A  A  QSIE +RRRID  G  EP 
Sbjct: 121 GSPFAGSISGRDVSVDKRDDQRLELSFIPEAAAQDASMAVDQSIETIRRRIDTLGTKEPN 180

Query: 175 IARQGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRA----LGDGSVPAGYRLLPS 230
           I RQGADRI++Q  G SDP R+K ++G+TAK+TF MV D      +  G +P G   LPS
Sbjct: 181 ITRQGADRIVIQAAGESDPERLKAVVGKTAKLTFQMVDDSVTPEDIAAGRIPPGSEALPS 240

Query: 231 ADPARPGEKILVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVG 290
            D  R     +V ++  V G  L D++ SFD + G   VSF F+G G+R+F D T   VG
Sbjct: 241 DD--RYQAAYVVRKRALVSGDELVDSRQSFDDR-GAPAVSFKFNGSGSRKFGDATARNVG 297

Query: 291 KPFAIVLDDKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERT 350
           K FAIVLD +++SAP I   I GG G I+GSFTA SA+DLA+LLR+GALPAPL V ++ T
Sbjct: 298 KRFAIVLDGRIISAPTINGAILGGSGIITGSFTAESASDLALLLRSGALPAPLKVEQQNT 357

Query: 351 VGPDLGADSIRAGMIAISVGFVLVVAYMGIFYGL-FGWFANVALVFNLAITLGALSLMQA 409
           VG +LGAD++RAG I+  V F+ +V +M + YGL FG  + +AL+ N  + + A+SL QA
Sbjct: 358 VGAELGADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAMSLTQA 417

Query: 410 TLTLPGIAGLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITT 469
           TLTLPGIAGL+L+L +AVDAN+LI ER+R+EA+ G+    + + GF RA  TI D+N+TT
Sbjct: 418 TLTLPGIAGLILTLAVAVDANVLIYERMRDEARAGKSPILAADAGFSRAMTTIIDANVTT 477

Query: 470 LIKMAILFSIGVGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPM 524
           L+   I+F+ G G +RGFA T+S+G+  S+FTA+ V++LL+  WFR  +PK LP+
Sbjct: 478 LVAAGIMFAFGAGPVRGFAWTLSIGVFTSVFTAVLVSQLLIGWWFRAARPKKLPI 532



 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 34/170 (20%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 647 EIRRVDSVGASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVG 706
           ++ + ++VGA + A+  + G ++  +A I +++++   +   FG  +V+ ++++    V 
Sbjct: 351 KVEQQNTVGAELGADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVA 410

Query: 707 FFAITGMQFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRTMPLRQLIDKSINETLG 766
             ++T     L  IA ++  +  +++  V++Y+R+R+  R  ++  L    D   +  + 
Sbjct: 411 AMSLTQATLTLPGIAGLILTLAVAVDANVLIYERMRDEARAGKSPIL--AADAGFSRAMT 468

Query: 767 RTVGTSLATFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLL 816
             +  ++ T +A   +  FG   +R FA  L  GV  +  ++V ++  L+
Sbjct: 469 TIIDANVTTLVAAGIMFAFGAGPVRGFAWTLSIGVFTSVFTAVLVSQLLI 518