Pairwise Alignments

Query, 284 a.a., Protein of unknown function DUF6, transmembrane (NCBI) from Rhodospirillum rubrum S1H

Subject, 301 a.a., multidrug transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 71.2 bits (173), Expect = 3e-17
 Identities = 81/295 (27%), Positives = 133/295 (45%), Gaps = 36/295 (12%)

Query: 8   LVLGAAAMHAGWNAVVK----------VGLDGFSAVMLISMAAGVLSLLGLPFVPFPEPA 57
           LVL +A +HAGWN + K          +G    ++++L        + +G   +P     
Sbjct: 8   LVLFSALLHAGWNIIGKRYQSSGPSFFLGATSATSLLLTPYIVWYFTKIGWSTLP---TQ 64

Query: 58  SWPFLALSGCLHMGYNVALIGAYRAGDFGQIYPIARGAAPLMVAVLSALLLDEPPGLVAA 117
            W  L +SG   M Y + L  AY   D G  YP+ARG  P+++     ++L     L   
Sbjct: 65  FWLLLVVSGLSQMVYMLGLAFAYSKVDIGIAYPLARG-LPVLLVGAGTVMLGYDLQLNQW 123

Query: 118 LGIALLVGG---VWLMSIRGGAVGRSGGLPERRALLAALMTSCFI----AAYTLSDGLGG 170
           LG AL+  G   + L   R         L    AL+AAL T+ +      A  + +   G
Sbjct: 124 LGFALITLGCLMIPLQKFRQFRFADYANLGIVWALVAALGTAGYSIIDKEALAIIEQTVG 183

Query: 171 RAAGSAHAYALWL----FALDGVLALLVTVVLRG-RAIFKGMARALPAGIGGGALSLGAY 225
               ++++  L+L    +A+   + L +  +L G RA F    R        G +  G Y
Sbjct: 184 SQMPASYSAVLYLGIQFWAM--CIPLAIWYLLTGQRAPFVEAWRIRYTATLAGLMMGGTY 241

Query: 226 WTVIWAMSVAP-LGQVAALRESSVLFALLISVVFLGEKASRW----RLGAAALIA 275
             V++AM++   +  + ALR++S++F L + + FLGE   RW     LG +A++A
Sbjct: 242 SLVLYAMTLTENVSFIVALRQTSIVFGLFMGIAFLGE---RWYVTRLLGVSAIVA 293