Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 830 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  352 bits (902), Expect = e-101
 Identities = 186/451 (41%), Positives = 264/451 (58%), Gaps = 4/451 (0%)

Query: 33  RWIWRSYLRSALIPLVFIELVFLAIYLLSHQISTSRTLESFGSAVENEFYGAAEREAALL 92
           +WIWR+++RSALIPLV +E   +AIYLL++       ++       N+   +A  E+ L+
Sbjct: 11  QWIWRAFVRSALIPLVLVETALIAIYLLTNGAIRDAQIDHLRQTALNDLQASASLESRLI 70

Query: 93  SERLAALGTTASVFAHQAARVLSTPCQPAPRERARLALGANGVLYSTGAPEGSAALFYSG 152
           SE+LA +G+   ++ +  A+ L      A  E   LAL A+GV YS    +G AA+FYSG
Sbjct: 71  SEQLAQVGSLTQLYRNLTAQALQGGDPVALPE---LALSADGVRYSPD-DDGGAAVFYSG 126

Query: 153 IIPVGPAQIDKAVCSAALDPLMRDISAVEPLVDQIYVNTWDSMNRIYPPIDVLSQYAPHM 212
             P     + K      L+PLM++I A  PL+  +Y N+WDS N IYP    L QY   M
Sbjct: 127 ATPAEQHDLQKIARLRQLEPLMKEIEARNPLIASLYFNSWDSFNHIYPWFFTLDQYPADM 186

Query: 213 DIPSFNFFYEADQEHNPERKVVWTDVYLDPAGRGWIASAIAPAYRGTILEGVVGLDVTVG 272
           DIP +NF+Y AD EHNP R VVWTDVYLDPAG GW+ SAIAP YR   LEGVVG+D+TV 
Sbjct: 187 DIPRYNFYYLADAEHNPSRGVVWTDVYLDPAGHGWMMSAIAPVYRDDFLEGVVGIDITVS 246

Query: 273 TFIDRVLAAELPFDAYGLLLDRNGGILGAPKVAGEDWGAKPLTEATYGGAITKDTFVDPA 332
             +D++   ++P+  Y +L+  +  I+  P+   +D+G   LT+ +Y  AI  + F    
Sbjct: 247 VILDQIGQLQVPWGGYAMLVSDDLTIMALPEPGEDDFGLAELTDHSYQQAIRSEMFKPED 306

Query: 333 FNLFARAEPADLLAALQSQSNGVRPVTLAGKQKVVAWAKVASTGWTYLMVADRDTVFGDI 392
           F L +RAE A+L AA+ S SNGV+ V L G+ ++VAW  VA TGW  L V D   VF   
Sbjct: 307 FQLDSRAETAELAAAISSTSNGVQQVMLGGRPQLVAWTTVAQTGWHLLAVVDETAVFRQT 366

Query: 393 LRLDRLFTVIGYLMAGGLLVFYLGFLAFLYIRVREMSVRLSGPLSALNAMIRRIASGSYF 452
             L   +  IGYL+  GL++FY+GF A +++R R++S  L  P++ ++ M+  I  G + 
Sbjct: 367 NILASRYQQIGYLLIAGLVLFYIGFFAVMWLRARQLSQALLAPIAGISRMLGDIGLGRWR 426

Query: 453 QTAPAFDVRELDETGREVAAMGDRLGRANEE 483
                  +RELDE  R    +G RL  +  E
Sbjct: 427 PEPVRAQIRELDEMSRHTQDIGSRLSHSESE 457



 Score =  107 bits (266), Expect = 5e-27
 Identities = 79/247 (31%), Positives = 127/247 (51%), Gaps = 13/247 (5%)

Query: 490 ELVRARDAAQAAARAKAEFLATMSHEIRTPMNAVIGMTGLL---LDGPLEPRQIDYARTI 546
           EL  A   AQAA+ AK   L+ +SHE+RTP+NA++G   L+    D   +    +Y   I
Sbjct: 586 ELRAATLQAQAASEAKGRLLSGISHELRTPLNAILGFAQLMRMDCDDSSQSEAAEYLDEI 645

Query: 547 QRSGEHLLGLINDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDL 606
             +  HL  L+ +IL++S +   R  L  +   +   ++    L  +    + L + + L
Sbjct: 646 LLASRHLNQLLGEILEWSSLQKERPQLELQPVDVCSLMRECAELIALEVQQRGLQLDLSL 705

Query: 607 -DRALAPGYRGDSQRLRQILVNLVGNAVKF-TDKGMVTVQGDVLKIENDIHWLRLRVVDT 664
            D  L      + +RLRQ+L+NL+ NA+K+    G ++     L+ E     +R+ V DT
Sbjct: 706 PDDGLL--VLAEPRRLRQVLLNLLSNAMKYNVPNGHIS-----LRAETSPGHVRILVEDT 758

Query: 665 GCGIPRERFNDLFAAFQQLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVF 724
           G GI + +   +F  FQ+L G       GTG+GL++  + ARLM G + + S PG GS F
Sbjct: 759 GLGIDQAQQAQVFEPFQRL-GRENSMIQGTGIGLSLCLEFARLMNGQLGLHSEPGVGSRF 817

Query: 725 SVVVPMV 731
            + +P V
Sbjct: 818 WIELPRV 824