Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  221 bits (563), Expect = 4e-61
 Identities = 170/468 (36%), Positives = 245/468 (52%), Gaps = 55/468 (11%)

Query: 489  EELVRARDAAQAAARAKAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQR 548
            EEL +A+D A AA++AK++FLA MSHEIRTPMNA+IGM+ L L   L+ +Q +Y   I R
Sbjct: 1024 EELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDR 1083

Query: 549  SGEHLLGLINDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDR 608
            + + LLG+INDILDFS+I+ G+L +    F L   ++ +  +  V A+ K+L +   +  
Sbjct: 1084 ASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAP 1143

Query: 609  ALAPGYRGDSQRLRQILVNLVGNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGI 668
             +     GD  RL Q+L+NL+ NA+KFT++G V +    L  E++   L+  V D G G+
Sbjct: 1144 NIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNGIGL 1203

Query: 669  PRERFNDLFAAFQQLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVV 728
              E+   LF +F Q D S TR +GGTGLGLAI ++L  LMGG+I V S  G GS F   V
Sbjct: 1204 TEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFSV 1263

Query: 729  PMVPLSRTPAPDGTLGDGDAERGEEPPAADVPTEAAASRALVVLVAEDILENQILVQAVL 788
                  R    D  L               V  E    R   +LVA+D    + ++++ L
Sbjct: 1264 ------RFKVADNQL-------------IKVAQELEGMR---ILVADDNATARDILRSTL 1301

Query: 789  EKQGHRVILAANGREALAKLRGADPVDVVLMDIQMPVMDGLDACRAI---RGLPPEVHFS 845
            E  G  V    +G EAL++ +  D   V L+D +MP MDGL+  R +   R  PP+    
Sbjct: 1302 ESMGFTVDTVRSGAEALSRCQETD-YGVALIDWRMPEMDGLETARRLLSERTNPPK---- 1356

Query: 846  DGRPIAGVPIIAFTADALPGD-RERFLSAGMNEHLAKPLNARRLRALLGDIAAGRPLTPR 904
                     I++  AD   GD  ++   A ++ ++ KP++A RL  L G ++A      +
Sbjct: 1357 -------TLIVSAHAD---GDFIDKAEQAEISGYITKPISASRL--LDGIMSA----LGK 1400

Query: 905  SSAAPSPRKSLEAPRRLLDPEALAQL---RTSLGEDYPIYLRAAEEAL 949
              A P  RK  E     + P  LAQL   R  L ED  +    A E L
Sbjct: 1401 QGAMPVRRKGSE-----VSPALLAQLKGKRILLVEDNEMNQEVASEFL 1443



 Score = 90.9 bits (224), Expect = 7e-22
 Identities = 77/251 (30%), Positives = 111/251 (44%), Gaps = 22/251 (8%)

Query: 760  PTEAAASRALVVLVAEDILENQILVQAVLEKQGHRVILAANGREALAKLRGADPVDVVLM 819
            P   A  +   +L+ ED   NQ +    LE+ G  + +A NG+ AL KL      D+VLM
Sbjct: 1415 PALLAQLKGKRILLVEDNEMNQEVASEFLEQVGVILSIAENGQVALEKL-AMQSFDLVLM 1473

Query: 820  DIQMPVMDGLDACRAIRGLPPEVHFSDGRPIAGVPIIAFTADALPGDRERFLSAGMNEHL 879
            D QMPVMDG  A   +R  P          +A +P+IA TA+A+ GD+E  L AGMN+H+
Sbjct: 1474 DCQMPVMDGYQATAELRKRPE---------LADLPVIAMTANAMAGDKEMCLRAGMNDHI 1524

Query: 880  AKPLNARRL-RALLGDIAAGRPLTPRSSAAPSPRKSLEA---PRRLLDPEALAQLRTSLG 935
            AKP+    L + LL  +     +   +S   + + S +A       LD +   QL  +  
Sbjct: 1525 AKPIEVSLLYKTLLEYLGDDSQVIEETSTEQTDQHSQDAYWPQHPALDIDKGLQLVQNSA 1584

Query: 936  EDYPIYLRAAEEALRHRARALPEALARGAFEEASQLLHGLRGT--------LAAFGMEAE 987
              Y              A  +  A   G  EEA +  H L+G         L A   + E
Sbjct: 1585 RLYRRIFERFYTGQSRCAELIATAQREGKQEEAVRYAHTLKGVAGNLCCPELVALAKQVE 1644

Query: 988  ATLCQRLRGDL 998
             TL   +  D+
Sbjct: 1645 QTLSDSIEADV 1655