Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  325 bits (833), Expect = 1e-92
 Identities = 219/541 (40%), Positives = 299/541 (55%), Gaps = 43/541 (7%)

Query: 490  ELVRARDAAQAAARAKAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRS 549
            EL +A++AA++A RAK EFLA MSHEIRTPMN ++GMT L LD  L P Q DY   ++ S
Sbjct: 521  ELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQRDYLEMVKSS 580

Query: 550  GEHLLGLINDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRA 609
             + LL +INDILDFS+I+ G+L L    F L   ++  +    + A  + L++R ++   
Sbjct: 581  ADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRSLTLRCEVPEE 640

Query: 610  LAPGYRGDSQRLRQILVNLVGNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIP 669
            +A GY GD  RLRQ+L+NLVGNA+KFT++G V V     ++E     L   V DTG GIP
Sbjct: 641  VADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAV-----RVEARDGLLHFAVSDTGIGIP 695

Query: 670  RERFNDLFAAFQQLDGSATRTHGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVP 729
             ++   +F AF Q D S TR  GGTGLGL I  +L RLMGG + V S PG+GS F     
Sbjct: 696  ADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTFHFTAR 755

Query: 730  MVPLSRTPAPDGTLGDGDAERGEE--PPAADVPTEAAASRALVVLVAEDILENQILVQAV 787
            +       A     G+ DA RGE   PP             L +LVAED   NQ LV  +
Sbjct: 756  L----EAVAGPAESGEADAGRGEVVLPP-------------LRLLVAEDNPVNQKLVLTL 798

Query: 788  LEKQGHRVILAANGREALAKLRGADPVDVVLMDIQMPVMDGLDACRAIRGLPPEVHFSDG 847
            L+K+GHRV LA NG++ALA L   D  D+VLMD+QMPVM GL+A R IR    E    DG
Sbjct: 799  LQKRGHRVTLADNGQQALAAL-ATDHFDLVLMDMQMPVMGGLEATRRIRA--AEAARGDG 855

Query: 848  RPIAGVPIIAFTADALPGDRERFLSAGMNEHLAKPLNARRLRALLGDI-----------A 896
            + +   PI+A TA+A+ GDRE  L AGM+ +++KPL      + + D+           A
Sbjct: 856  QHL---PIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVLPPERLRQAGAA 912

Query: 897  AGRPLTPRSSAAPSPRKSLEAPRRLLD-PEALAQLRTSLGEDYPIYLRAAEEALRHRARA 955
            A  P   +++ A +P +S  A  R  D  EA+A+L     E + + ++   + L +  + 
Sbjct: 913  AAIPADGQAAVAAAPSESAPAALRRCDRAEAVARLEGD-EELFAMLVKMFSDDLPNYLQR 971

Query: 956  LPEALARGAFEEASQLLHGLRGTLAAFGMEAEATLCQRLRGDLAGGAGIAIRVEARKLAD 1015
            L  ALA    E  S+  H L+G LA F       L   L     GG    + V  R+L +
Sbjct: 972  LNAALAGQDMEALSREAHTLKGLLATFSAGRGTALALELETRAKGGHVETLGVLVRQLQE 1031

Query: 1016 Q 1016
            +
Sbjct: 1032 E 1032