Pairwise Alignments

Query, 1041 a.a., Periplasmic Sensor Hybrid Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 1430 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  263 bits (672), Expect = 7e-74
 Identities = 209/525 (39%), Positives = 271/525 (51%), Gaps = 61/525 (11%)

Query: 459  DVRELDETGREVAAMGDRLGRANEELIANRE-ELVRARDAAQAAARAKAEFLATMSHEIR 517
            D+ E  E  R +    ++L    EEL+A R  EL  A++AA+AA R+K+ FLA MSHEIR
Sbjct: 645  DITEAKENERALLRYQNQL----EELVAARTAELAAAKEAAEAANRSKSSFLANMSHEIR 700

Query: 518  TPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSGEHLLGLINDILDFSRIDTGRLVLVDRD 577
            TPMNA+IG+T L+       RQ      +  +  HLLG+INDILDFS+I+ G++ L   D
Sbjct: 701  TPMNAIIGLTHLIRRDIATERQRQQLDKVSNAAHHLLGIINDILDFSKIEAGKMSLEPTD 760

Query: 578  FSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGDSQRLRQILVNLVGNAVKFTD 637
            F +   +  V +L    A AK L V +D+ R L P   GD  RL Q+L+N VGNAVKFT+
Sbjct: 761  FEVDRVIHNVCTLVAEKAEAKGLEVVVDIAR-LPPALHGDGLRLGQVLLNFVGNAVKFTE 819

Query: 638  KGMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLFAAFQQLDGSATRTHGGTGLG 697
            +G V V+G V + E D  W+RL V DTG G+ RE+   LF AF Q D S TR +GGTGLG
Sbjct: 820  RGSVVVRGYVARQEADSLWVRLEVADTGIGLSREQQQCLFQAFTQADVSTTRQYGGTGLG 879

Query: 698  LAISRKLARLMGGDITVSSTPGEGSVFSVVVPMVPLSRTPAPDGTLGDGDAERGEEPPAA 757
            LAISR+LA +MGG + V S  G+GS F +           AP G++   D    E PP  
Sbjct: 880  LAISRRLAEMMGGRVGVDSESGKGSTFWI----------EAPFGSVAAHD--HLELPPC- 926

Query: 758  DVPTEAAASRALVVLVAEDILENQILVQAVLEKQGHRVILAANGREA----LAKLRGADP 813
             +P      RAL V  +ED  E+     A L   G RV  AA+G  A    LA  R  DP
Sbjct: 927  -LPRNL---RALAVDDSEDARESLAHTLAAL---GTRVDTAASGEAALDAVLAADRLGDP 979

Query: 814  VDVVLMDIQMPVMDGLDACRAIRGLPPEVHFSDGRPIAGVPIIAFTADALPGDRERFLSA 873
              +VL+D  MP  DGL+  R IR LP  V            ++   A  +P        A
Sbjct: 980  YQLVLLDWLMPPPDGLETGRCIRTLPLNVQPQQ--------LLVSAAKDIPA--TALSEA 1029

Query: 874  GMNEHLAKPLN-ARRLRALLGDIAAGRPLTPRSSAAPSPRKSLEAPRRLLDPEALAQLRT 932
            G    +AKP+  A  L AL G      PL      + SP   +E         +LA+ R 
Sbjct: 1030 GFAAFIAKPVTPASVLVALEGAFGDTPPL------SRSPGDEME--------RSLARYRN 1075

Query: 933  S---LGEDYPIYLRAAEEALRHRARALPEALARGAFEEASQLLHG 974
                L ED P+    A E LRH   A+   LA    +EA +L  G
Sbjct: 1076 QRILLAEDNPLNQEVALELLRHVGLAVD--LAENG-KEALELARG 1117



 Score =  112 bits (281), Expect = 1e-28
 Identities = 99/302 (32%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 711  DITVSSTPGEGSVFSVVVPMVPLSRTPAPDGTLGDGDAERGEEPPAADVPTEAAASRALV 770
            DI  ++    G    +  P+ P S   A +G  GD         P  ++    A  R   
Sbjct: 1020 DIPATALSEAGFAAFIAKPVTPASVLVALEGAFGDTPPL--SRSPGDEMERSLARYRNQR 1077

Query: 771  VLVAEDILENQILVQAVLEKQGHRVILAANGREALAKLRGADPVDVVLMDIQMPVMDGLD 830
            +L+AED   NQ +   +L   G  V LA NG+EAL   RG     ++LMDIQMPVMDGL+
Sbjct: 1078 ILLAEDNPLNQEVALELLRHVGLAVDLAENGKEALELARGK-AYALILMDIQMPVMDGLE 1136

Query: 831  ACRAIRGLPPEVHFSDGRPIAGVPIIAFTADALPGDRERFLSAGMNEHLAKPLNARRLRA 890
            A R IR LP           AG PI+A TA+A   DR+  ++AGMN+H+AKP++  +L  
Sbjct: 1137 ASRQIRALPG---------YAGTPILAMTANAFSEDRDLCIAAGMNDHVAKPVDPDQLYG 1187

Query: 891  LL-------GDIAAGRPLTPRSSAAPSPRKSLEAPRRLLDPEALAQ-LRTSLGEDYPI-- 940
             L       G     RP  P + A  +   +L A    +    LAQ LR   G    +  
Sbjct: 1188 TLLRWLPEPGRDVVVRPPLPAAEAPAATADALAAALEAVPGLELAQALRVVRGNRTRLAQ 1247

Query: 941  YLRAAEEALRHRARALPEALARGAFEEASQLLHGLRGTLAAFGMEA----EATLCQRLRG 996
            +LR          R +   L  G   EA++++H L+G   + G+ A       L + LRG
Sbjct: 1248 FLRKFSVDHGGDGRRIEACLGFGETAEAARVVHTLKGLAGSLGLAAIQAHTLALEEALRG 1307

Query: 997  DL 998
             L
Sbjct: 1308 SL 1309