Pairwise Alignments

Query, 404 a.a., succinyl-diaminopimelate desuccinylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 384 a.a., succinyl-diaminopimelate desuccinylase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  280 bits (715), Expect = 7e-80
 Identities = 164/381 (43%), Positives = 218/381 (57%), Gaps = 20/381 (5%)

Query: 19  LARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYARRGGAGPCF 78
           L +AL+A PSVTP D G   ++   L A+GF    + F     E   N++ARRG  GP F
Sbjct: 16  LTKALIARPSVTPLDEGCQTLMAERLAAIGFNIEAMVF-----EDTTNMWARRGNTGPVF 70

Query: 79  GFAGHTDVVPAGD--GWSRPPFGAEVVDGALVGRGAADMKGGIACFVAAVARLISGPDST 136
            FAGHTDVVP GD   W  PPF   ++DG L GRGAADMKG +A  V A  R ++     
Sbjct: 71  CFAGHTDVVPTGDLSRWHTPPFEPTIIDGYLYGRGAADMKGSLAAMVVATERFVA----- 125

Query: 137 GSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDLCLVGEPTNPEGLGDMI 196
                 +  GSIA LIT DEEGP ++GT +V++ +E   E++   LVGEP++   LGD++
Sbjct: 126 ---KHPNHPGSIAFLITSDEEGPFINGTTRVIDTLEARNEKITWALVGEPSSTLKLGDVV 182

Query: 197 KIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAETLDDGTAHFQPSSLQL 256
           K GRRGSLTA +T+ G  GHVAYPHLADNP+H+ +     L     D+G A F P+S+Q+
Sbjct: 183 KNGRRGSLTANLTVKGVQGHVAYPHLADNPIHKAAPFLAELSQTHWDNGNAFFPPTSMQI 242

Query: 257 TSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDESGFSLVLEHS 316
            +I+ G  A+NVIP    + FN R++   + E L   +     A     E  + +    +
Sbjct: 243 ANINGGTGASNVIPGALEVMFNFRYSTEVTAEILIERVETLLTA----HELDYDIRWTFN 298

Query: 317 GDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIR-SHCPVAEFGLVGRTMHK 375
           G  FLT  GPL D    A + VTG   +  T+GGTSD RFI  +   V E G V  T+HK
Sbjct: 299 GLPFLTGEGPLLDATRHAIRQVTGYDTDPQTTGGTSDGRFIAPTGAKVLELGPVNATIHK 358

Query: 376 PDERVAVADLEALSEIYRRVL 396
            +E V V DLE L+  Y  +L
Sbjct: 359 VNECVKVDDLEQLALCYEVIL 379