Pairwise Alignments

Query, 659 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 692 a.a., DNA polymerase III subunit gamma/tau from Vibrio cholerae E7946 ATCC 55056

 Score =  280 bits (717), Expect = 1e-79
 Identities = 173/430 (40%), Positives = 240/430 (55%), Gaps = 24/430 (5%)

Query: 38  YRVLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARAL 97
           Y  LARK+RP  F  ++GQ  ++  L NA+   RL  A++ +G RGVGKTT  RL A+ L
Sbjct: 3   YLALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGL 62

Query: 98  NCVGADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREILDGVRYRPAV 157
           NC     + G+T TPCG C  C+ I + R VD+LE+DAASRT V D RE+LD V+Y+PA 
Sbjct: 63  NC-----ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPAR 117

Query: 158 ARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRR 217
            R KVY+IDEVHMLS  +FNALLKTLEEPPE+VKF+ ATT+ +K+PVT+LSRC +F L+ 
Sbjct: 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKP 177

Query: 218 VSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAIAHGGGTVSEAQV 277
           +S   +     ++   E       AL L+A AADGS+RD LSL DQAIA G G V    V
Sbjct: 178 ISVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIV 237

Query: 278 AEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLVHWMTRVKV 337
           A MLG  D      LL A+        +D ++     G +   ++Q L   +H +   + 
Sbjct: 238 AHMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQA 297

Query: 338 VPVSAEDAAVPEAERTRGRAMAERLSMAVLNRCWQILLKGLGEARGAPVPLQAVEMVLIR 397
           +P +  D ++PEA R    ++A+ L+   +   +QI LKG  +   +P     +EM+++R
Sbjct: 298 LPATL-DKSLPEASRI--ESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLR 354

Query: 398 L--------AYASDLPTPEEAL--KMIAGGAQPAAPRPPAPHSPA------GPPPAAPPP 441
           +        + AS +  P  A+    IA      A   P P   A          A P P
Sbjct: 355 MMAFRPSHVSLASVIVPPNTAVTAPTIAAPTSQMAAAAPQPQPVAQSNVSQSASQAMPHP 414

Query: 442 PSPPSRADEP 451
            +PP  A +P
Sbjct: 415 VAPPMMAAQP 424