Pairwise Alignments

Query, 699 a.a., TonB-dependent receptor (NCBI) from Rhodospirillum rubrum S1H

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 49.7 bits (117), Expect = 5e-10
 Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 13/218 (5%)

Query: 487 NPGLDPEKHHQIDVGAAWKGQDGTAFISAYGDMVEDYILDTRARGKDGVLRADGARV--Y 544
           N  L  E     ++G+ +       +++ +  + +++I D +  G D    A G+ +  Y
Sbjct: 502 NNKLRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFI-DVKQVGYDN---ATGSVIQQY 557

Query: 545 TNTTAV-IGGIEAGGDIRVLKDWIIDTSLAVTVGQDLDHDRPLAQIPPVAMGLGLTYDGG 603
            N   V   G E     R+   W ++  L    G+D   ++ +  + P+   + L Y   
Sbjct: 558 QNIAGVKTYGAEMSVMHRLDDRWSVENKLGYVDGKD-GENQYVRTLTPLEGSVQLNYQRE 616

Query: 604 GWTVGGRLRGALAQGRADTSTLTGSGRDVD--DTPGWATVDLHATLTSFQPFEIGVGVTN 661
            W    RL  A A  R  T T T  G++ +   T GW + D+               V N
Sbjct: 617 RWDAYSRLNWASAMSRVPTCT-TEQGKETECATTTGWVSWDIGLNYQWNAQLSASFNVVN 675

Query: 662 LLDATYAEHLNKANTFDPMAVQVNEPGRSFYLTVSAAF 699
           LLD  Y  + + A       +   EPGR  Y TV A +
Sbjct: 676 LLDREYTRYQDVAGVTPSDTLYSTEPGR--YFTVHAKY 711



 Score = 35.8 bits (81), Expect = 7e-06
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 8/158 (5%)

Query: 11  LGQTGLCALLVLTLPPANARADDPVTAPLVITSEFLKDLASP---QVTRIDADDPARSPV 67
           L       L VL    A+A  +      +V+T+  ++   S     V  ++ +   +   
Sbjct: 3   LSPVSAAVLSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEKQGK 62

Query: 68  QETGEMLRSVPGVAVGRAGGHGFEPVIRGQQQGAIAVIADDTMTLGGCPGRMDPPTSFAR 127
            E  + L   PGV+V    G      IRG     IA++ D   +  G  G  D    + R
Sbjct: 63  TELYDALNQEPGVSVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGY-GAADINDKYGR 121

Query: 128 P----GSYDTLTVTRGYRTVTNGPGASGGTIRLDKELP 161
                 +   + V +G  +   G GA GG + ++ + P
Sbjct: 122 NTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAP 159