Pairwise Alignments

Query, 1187 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 87.4 bits (215), Expect = 4e-21
 Identities = 133/556 (23%), Positives = 207/556 (37%), Gaps = 121/556 (21%)

Query: 384 YQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKLDGGLDHLLVDEAQDTSPDQWAIA 443
           YQ      G +D+ +++L A  LL G+     +         H+LVDE QDT+  Q+A  
Sbjct: 177 YQEACDRAGLVDFAEILLRALELLRGN---QHIREHYQARFKHILVDEFQDTNAIQYAWL 233

Query: 444 SALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQGADPKAFEDMRRHFHDAVSDIGGH 503
             +AG                V  VGD  QSIYG++GA  +  E   R F    +     
Sbjct: 234 RMMAGA------------QSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNT----- 276

Query: 504 FAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADSGVAEDITHHAFRKDAGGLVE 563
              + L  ++RST+ +LEA N + A    R G                           +
Sbjct: 277 ---IRLEQNYRSTKTILEASNTLIANNSERMG--------------------------KQ 307

Query: 564 LWPAMEPAPRVVGDPWKPPVERIGLESARARL--AKRVAQRIK-TMTSGGELLESQGRPI 620
           LW        +VG+P       I + SA   L  A+ V  +IK     GG L +      
Sbjct: 308 LW-----TDGLVGEP-------ISVYSAYNELDEARFVVSKIKGWQEQGGTLTD------ 349

Query: 621 RPGDILVLVRRRGGFEEELVSALKSAKVEVAGVDRMTLTDQLAVMDLIALGKALLLPEDD 680
                  ++ R       L  AL  A +       M   ++  + D ++  + +    DD
Sbjct: 350 -----CAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDD 404

Query: 681 LTLASVLKGPLIGLDEDALFTL---ARDRGRDERLWDR----LRPH---AGAENAYGKAM 730
                V+  P  GL +  L T+   ARDRG    LWD     L        A +A  + +
Sbjct: 405 TAFERVINTPPRGLGDKTLETIRFAARDRGC--TLWDASVGLLNDQVLTGRAASALSRFV 462

Query: 731 EIIEPLRDRAGRLAPHEFYAHVL--DGPLNGRRLLLGRLGPEAEDPIDEFLALTLAHERV 788
           E+I  L +    +  H    H +   G L   +   G       + ++E +  T   E+ 
Sbjct: 463 ELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKP 522

Query: 789 GPPALQGFL-SWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPVVFLPDTLAKPTGN 847
                   L ++L    +E          DAV++MT+H +KGL+ P+VF+          
Sbjct: 523 EEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFM---------- 572

Query: 848 DLLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREYRRLLYVAMTRAADRLY 907
                    GV + +               + + A +  R  E RRL YV MTRA  +LY
Sbjct: 573 --------VGVEEGM-------------FPSQMSAEEAGRLEEERRLCYVGMTRAMQKLY 611

Query: 908 ICGWETLKRPAEDCWY 923
           I   E  +   +D ++
Sbjct: 612 ITYAEMRRLYGQDKYH 627



 Score = 52.4 bits (124), Expect = 1e-10
 Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 44/153 (28%)

Query: 22  KPQRRAADPLASAWVAASAGTGKTKVLTDRVLRLL-LAGTPPQRLLCLTFTKAAAAEMAN 80
           K +   A PL +  + A AG+GKT+VL  R+  L+ +    P  ++ +TFT  AAAEM  
Sbjct: 14  KQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRG 73

Query: 81  RVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQT 140
           R+  ++ G A+                                           G+   T
Sbjct: 74  RIEELMHGTAS-------------------------------------------GMWCGT 90

Query: 141 IHGFCQTLLRRFPLEAGVAPHFEVLDDREAQAL 173
            HG C  +LR   L+A +   F+++D  + Q L
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRL 123