Pairwise Alignments

Query, 564 a.a., Periplasmic Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 639 a.a., cache domain-containing protein from Methanococcus maripaludis S2

 Score =  112 bits (279), Expect = 6e-29
 Identities = 95/355 (26%), Positives = 166/355 (46%), Gaps = 40/355 (11%)

Query: 230 QVVGAVMVSRGAEEIDETLFEMRLGVIEIFAFTLALTILLSFYIAGTIVRPLLRLAGAAD 289
           +++G + V     +      ++R     +    L + +++S+ I   I++PL +L   A+
Sbjct: 293 KIIGMLFVGTPESKFLALQADVRNQTFVVGLIGLLIALIVSYLINRGIIKPLEQLKQGAE 352

Query: 290 RVRHGKAGRHEAIPDFSNRRDELGDLSAALREMTEVLWARMDAIERFAAD---------- 339
            V +G+  +   +    +  DE G+L+ A  +M   +    D +++ A +          
Sbjct: 353 WVSNGRYDQKVIV----DSDDEFGELAKAFNKMATQINISDDKLKKHAEELKISYNELKE 408

Query: 340 -----------VAHEIKNPLTSLRSAVE-----TVARIDDPNQQKRLMAVIVDDVQRLNR 383
                      V+HE++ PLTS++  VE     T+  I+D   QK+ + V  D++ RL R
Sbjct: 409 LDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAIND--SQKKCLQVADDNIVRLRR 466

Query: 384 LITDISDASRLDAELSRAEMESVEIRPMLEMLAEVHAAEAEQRGVTIKVMGDAGDALGIE 443
           LI  + D S+++        E V +R ++  + E     A ++   IK+  +  D + IE
Sbjct: 467 LIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKN--IKLNKEVED-IAIE 523

Query: 444 GLEGRLVQVFRNLIGNAVSFSPPGGTITLRAWRTKGKVVITVADDGPGIPPGKEADIFKR 503
             + R+ QV  NLI NA+ FSP   +I +        + + V D G GIP      IF R
Sbjct: 524 ADKDRITQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKDMEKIFNR 583

Query: 504 FYSERPREEKFGTHSGLGLSISQQIVETHRGTIRAENRRDGEGKIVGAMFTVELP 558
           FY      ++    SGLGL++ + IVE H+G+I  E+     GK  G+ F + LP
Sbjct: 584 FYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESEL---GK--GSTFHIILP 633