Pairwise Alignments

Query, 241 a.a., Two component Transcriptional regulator, Winged helix family (NCBI) from Rhodospirillum rubrum S1H

Subject, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  152 bits (383), Expect = 7e-42
 Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 7/229 (3%)

Query: 1   MTHSIALVDDDRNILTSVSMTLEAEGFRVVTYTDGAEALRGLSIEPVDLAVLDIKMPRMD 60
           M H I L+DDD  + + ++  L+ EGF +    DG   L  +S E +DL +LD+ MP+++
Sbjct: 1   MAH-ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLN 58

Query: 61  GMELLQKLRERTAMPVIFLTSKDDEVDELLGLRMGADDYIKKPFSQRLLIERIRAILRRL 120
           GME L++LRE+ A PV+ LT+K +E+D ++GL +GADDY+ KPFS R L+ RIRAILRR 
Sbjct: 59  GMETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR- 117

Query: 121 DLQKASPGGPELSAAALVRGDLTLDPDRHLCTWLERPVDLTVTEFLIIQALAQRPGHVKS 180
                  G    ++  +   D+ + P +       + ++LT TEF ++    Q PG   +
Sbjct: 118 ----TQNGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLT 173

Query: 181 RDQLIDAAYGENIYVDDRTIDSHIKRLRKKFREVDREFSEIETLYGVGY 229
           ++ L     G+++   DR ID H+  LRKK  E     + I+TL G GY
Sbjct: 174 KEMLSIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222