Pairwise Alignments

Query, 360 a.a., Putative diguanylate cyclase (GGDEF domain) (NCBI) from Rhodospirillum rubrum S1H

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (338), Expect = 4e-36
 Identities = 77/189 (40%), Positives = 113/189 (59%), Gaps = 1/189 (0%)

Query: 168 NLAGALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANRRGLLDAFGGAVLTRSRAP 227
           NLA +L     + +    T  +  R+LE +A +D LTG ANR+   + F  A+     + 
Sbjct: 294 NLALSLVVTIGILFISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQ 353

Query: 228 HRLSLLVLDLDHFKSINDRYGHEAGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPD 287
             +S+L++D+DHFK +ND YGH  GD VL  V ++++  ++  D++ R GGEEF +LLP+
Sbjct: 354 TSISILLIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPE 413

Query: 288 TDLAGAREVAEKIRKAIESTALIGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQ 347
            DL+ A E+AE+ R +I    L   G  +++TVSIGVAE     P    L   AD  LYQ
Sbjct: 414 MDLSRAAELAERFRDSISQRELKVNGVHIAITVSIGVAEYQKLEP-AEDLIKRADLALYQ 472

Query: 348 AKKAGRNRV 356
           AK+AGRN+V
Sbjct: 473 AKEAGRNQV 481