Pairwise Alignments

Query, 278 a.a., Pseudouridylate synthase (NCBI) from Rhodospirillum rubrum S1H

Subject, 261 a.a., tRNA pseudouridine synthase A (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (458), Expect = 2e-50
 Identities = 107/258 (41%), Positives = 146/258 (56%), Gaps = 2/258 (0%)

Query: 2   VRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQV 61
           +R  L +EYDG  Y GWQRQ    ++Q  LE A   +      +  +GRTD+GVHA GQV
Sbjct: 1   MRVALGIEYDGSRYFGWQRQAEVDSVQAQLERALSFVANEPISIQCAGRTDAGVHATGQV 60

Query: 62  AHLDLPRAYGAATVMKALNAHLRPQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRIAP 121
            H +       +     +N +L P  IAV  A +V ++FHARF+A  R YRY I N    
Sbjct: 61  VHFETNAVRKESAWTLGVNVNL-PDDIAVRWAKDVDDEFHARFTATARRYRYMIYNHQFR 119

Query: 122 PTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRVGD 181
           P + +  V      ++ A M EAAQ L+G  DF+SFRA +CQ+++P + + E+ VTR G 
Sbjct: 120 PGILRSGVSHYPGQIDEAKMHEAAQFLLGEQDFTSFRAIQCQSNTPFRCVHEVNVTRQGM 179

Query: 182 EIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLYFL 241
            I V  +A +FLHH VRN+VG+L  VG GR     ++  L   DR+ A  TA P+GLY +
Sbjct: 180 YICVDIKANAFLHHMVRNIVGSLLEVGYGRQPVSWIKELLALKDRTQAAATAKPNGLYLV 239

Query: 242 RVRFPGETAAPAKA-GPL 258
            V +P   A P  A GPL
Sbjct: 240 DVTYPEHYALPKLALGPL 257