Pairwise Alignments

Query, 705 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  301 bits (770), Expect = 1e-85
 Identities = 203/636 (31%), Positives = 322/636 (50%), Gaps = 22/636 (3%)

Query: 65  VHPEEREAVLLLWRRALR-EGEEFEARYRLHRGLSGYRWALGQGRPLRGD-DGEVREWIG 122
           +HP++   V       L+ E E+F   YR  R          +GR ++ D  G     IG
Sbjct: 327 IHPQDLPIVHATLIAHLKGESEQFAVEYRAVRADGSEICIEDRGRVIQRDASGRALRMIG 386

Query: 123 TVVDIHDHMEAERTIALSEERLRLA---LDSADLGVWECTIATNQWWFSEAALRILGCPP 179
           T  DI D       +    E+ RLA    ++A  G+            ++A   + G   
Sbjct: 387 TRRDISD-------VRRQAEQQRLAATVFEAASEGMVIMDATYRVLAVNDACCALSGYER 439

Query: 180 DA--ETSIETVMGAIHSDDLDGLRARWHAARTGRARD-RMEGEFRIQRGGGRLGWIACSA 236
           +     SI  + G   S      + ++ A R    R    +GE   +R  G +       
Sbjct: 440 EELLGRSIARIAGTPES------QRQYEAMRDALERHGHWQGELIEKRKSGEVYPQWVQL 493

Query: 237 RLVADDGKAVTRMLGTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGG 296
           R V D   +VT ++  + D++  R   E+L +L H+D LTGL NR     R         
Sbjct: 494 REVRDSDDSVTHVVAFISDLSVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVR 553

Query: 297 AAGGAGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVV 356
             G   A+L +DLD FK  N++LG    DALL+ ++ RL ++L     I R+ GDEF+V+
Sbjct: 554 RNGRNMAVLYIDLDRFKLLNESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVL 613

Query: 357 VPGVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELA 416
           +       +   +   L   +  P VI ++ + +S  IG++L P +   A+ L+  A +A
Sbjct: 614 LDAYGSLSSLAHLGSRLLQRIRKPMVIDEQELVISASIGVSLLPDNSRDAEALLRQANIA 673

Query: 417 LQETKTISGCVTRFFSPRLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGA 476
           +Q+ K + G   +FF+ R    +     +  +LR+A + G+ E+FYQP++ L+D ++  A
Sbjct: 674 MQQAKHLGGNTLQFFTDRPQASSMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAA 733

Query: 477 EALLRWRHPTRGVMPPAAFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAG-SRIRMAVN 535
           EAL+RWRHP  G++ PA F+ + +   L   +GE+V+ +AC  A      G + IR++VN
Sbjct: 734 EALVRWRHPELGLVAPAQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVN 793

Query: 536 LFSAQFKAGTVDATVRRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVA 595
           L   Q + G   + VR+ L E+GLPA +LELE+TE   LD  +  ++  + LR LG  +A
Sbjct: 794 LSVKQLRQGNFVSLVRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLA 853

Query: 596 FDDYGTGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEG 655
            DD+GTG++SLS LKR+P+  +KIDR+F+  L  S +D AI RA++++ ++    V AEG
Sbjct: 854 IDDFGTGFSSLSYLKRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEG 913

Query: 656 IEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFL 691
           +E + Q   L    CDE QGY    P+P   F + L
Sbjct: 914 VETQAQMDFLKANHCDEIQGYLLSPPVPALQFAELL 949



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%)

Query: 133 AERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPDAETSIE-TVMGA 191
           A   +  SE RL LALD++ LG+W+  +  N+   S   + + G   +   + + +++  
Sbjct: 268 AAEELGESEARLNLALDASGLGLWDWDLQHNRVHHSRLEV-VFGVGLEKRHAEDGSLLPD 326

Query: 192 IHSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVADD--GKAVTRM 249
           IH  DL  + A   A   G + ++   E+R  R  G    I    R++  D  G+A+ RM
Sbjct: 327 IHPQDLPIVHATLIAHLKGES-EQFAVEYRAVRADGSEICIEDRGRVIQRDASGRAL-RM 384

Query: 250 LGTLRDITKTRLQREK 265
           +GT RDI+  R Q E+
Sbjct: 385 IGTRRDISDVRRQAEQ 400