Pairwise Alignments

Query, 705 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1281 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  357 bits (915), Expect = e-102
 Identities = 204/501 (40%), Positives = 285/501 (56%), Gaps = 7/501 (1%)

Query: 196  DLDGLRARWHAARTGRARDRMEGEFRIQRGGGRL--GWIACSARLVADDGKAVTRMLGTL 253
            D D  R  W   R   A     GE   +R  G +   W+  +A      G A+T  +   
Sbjct: 779  DKDFYRQMWEILRDTGA---WAGEIWDRRKNGEIYPKWMTINAVHDTQSG-ALTHYITLF 834

Query: 254  RDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGGAGAILLLDLDGFK 313
             DIT+ +    +++HLAH DPLTGLPNR  +  R + +LA     G   A++ +DLD FK
Sbjct: 835  SDITERKETEARIHHLAHHDPLTGLPNRFTLEARLEQSLADARRHGHKVAVMFMDLDRFK 894

Query: 314  EANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGGDEFLVVVPGVAEQWTATRIADGL 373
              ND+LG A GD+LL  IAHRL S++     + R+GGDEF+VV+P V     A  +A  +
Sbjct: 895  TINDSLGHAVGDSLLMEIAHRLRSAVRESDTVARLGGDEFVVVLPDVEGANDAAHVAGKI 954

Query: 374  YDVLTVPFVIGDRRIPLSGRIGIALAPRDGTSAQDLMTHAELALQETKTISGCVTRFFSP 433
             + +     +G   +  S  IGI+L P DG +   +M +A+ A+   K I     +FF+ 
Sbjct: 955  IEDVARSLRVGAHELHTSASIGISLYPDDGETVPTVMQNADTAMYHAKAIGRNNFQFFAS 1014

Query: 434  RLHDEARERQDMGLELRRATDNGEFELFYQPQIRLSDRAVVGAEALLRWRHPTRGVMPPA 493
             ++  A ER ++  +LR+A  N E EL +QPQ  L+   V G EALLRWRHP  G++PP 
Sbjct: 1015 AMNRAATERLELERKLRQAMVNDELELHFQPQFALAADRVTGVEALLRWRHPEDGLIPPD 1074

Query: 494  AFLHVLKRGPLAGEVGEWVVAKACADAAGLLNAG-SRIRMAVNLFSAQFKAGTVDATVRR 552
             F+ + +   L   +G+WV+  AC      L+ G   +RMAVNL + Q K     + V  
Sbjct: 1075 RFIPIAEETGLIVGIGDWVLQAACRQLKAWLDQGLPPLRMAVNLSTRQLKEKEFPSRVAA 1134

Query: 553  SLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYGTGYASLSMLKRY 612
             L E+GLPA LLELEITE   ++R E  +T L+ L D+G  +A DD+GTGY+SLS LK +
Sbjct: 1135 ILQETGLPAVLLELEITESGVMERPEEAITTLQALNDMGVTLAIDDFGTGYSSLSYLKLF 1194

Query: 613  PLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLSVTAEGIEEEEQEKLLLGQGCDE 672
            P+ RLKIDR+FV+ +   P D AI R  ++L ++ GL V AEG+E   Q  +L   GCDE
Sbjct: 1195 PIDRLKIDRSFVRDIERDPDDAAIARGTIALAHSLGLEVVAEGVETSAQLDMLAADGCDE 1254

Query: 673  GQGYFFGRPMPLADFIQFLAR 693
             QGYFF RP+PLA    FLA+
Sbjct: 1255 VQGYFFSRPLPLAAATAFLAQ 1275



 Score = 48.1 bits (113), Expect = 3e-09
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 2/133 (1%)

Query: 133 AERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPDAETSIETVMGAI 192
           A   +  +++RL  A     +G WE  + + + W SE A R++G  P    +    +  +
Sbjct: 334 AAEELQRTQDRLLEAQRIGHIGSWERDLRSGRLWCSEEAYRLVGLDPSEPLTYAHFLELV 393

Query: 193 HSDDLDGLRARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVADDGKAVTRMLGT 252
           H +D D  + +          +    E+R+    GRL       RL  D      R  GT
Sbjct: 394 HPEDRD--KVQQATDHNAAKEETFAVEYRVLLQDGRLRHFINRGRLFWDARGQPLRASGT 451

Query: 253 LRDITKTRLQREK 265
            +DIT+ +L  E+
Sbjct: 452 TQDITERKLAEEE 464



 Score = 38.1 bits (87), Expect = 3e-06
 Identities = 31/121 (25%), Positives = 47/121 (38%)

Query: 61  WLNLVHPEEREAVLLLWRRALREGEEFEARYRLHRGLSGYRWALGQGRPLRGDDGEVREW 120
           +L LVHPE+R+ V         + E F   YR+       R  + +GR      G+    
Sbjct: 389 FLELVHPEDRDKVQQATDHNAAKEETFAVEYRVLLQDGRLRHFINRGRLFWDARGQPLRA 448

Query: 121 IGTVVDIHDHMEAERTIALSEERLRLALDSADLGVWECTIATNQWWFSEAALRILGCPPD 180
            GT  DI +   AE        +LR  L +   G+           ++E    +LG P +
Sbjct: 449 SGTTQDITERKLAEEEYRRQSTQLRAVLQNMPQGISVFDEHLRLQLWNEGMREVLGLPAE 508

Query: 181 A 181
           A
Sbjct: 509 A 509