Pairwise Alignments

Query, 778 a.a., PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

Subject, 917 a.a., sensory histidine kinase from Sinorhizobium meliloti 1021

 Score =  169 bits (429), Expect = 5e-46
 Identities = 108/280 (38%), Positives = 153/280 (54%), Gaps = 9/280 (3%)

Query: 496 ERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEFLTNMS 555
           ++W+R   +  + PDG    +     DIT  ++ +  L  AK  AE AN AKS FL +MS
Sbjct: 375 DKWVR--ISKRKIPDGGTVAV---YTDITQLKQRQVELERAKSHAESANEAKSRFLASMS 429

Query: 556 HELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAG 615
           HELRTPLNAIIG+SE+L  E           D    I  +GRHLL +INDILD+S+IEA 
Sbjct: 430 HELRTPLNAIIGYSEMLIEEARDHEDEELVPDLD-KIASAGRHLLSLINDILDLSKIEAN 488

Query: 616 RATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLG 675
           +  +F E    A+++  V   V       G       +  L  +  +  +L+Q L NLL 
Sbjct: 489 KMEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLS 548

Query: 676 NAIKFTPAGGEIALSARGDE--DKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARR 733
           NA KFT  GG + L  R ++  D+  +V +V+D+GIGM+PE        F Q D    R 
Sbjct: 549 NAAKFTN-GGRVTLRVRREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRN 607

Query: 734 YEGTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLPA 773
           Y GTGLGL ++++F  + GG + V+S  G G+  T+ +PA
Sbjct: 608 YGGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTMEVPA 647



 Score = 59.7 bits (143), Expect = 7e-13
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 159 ALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLE-PGTTYGAMMAAACDNGAIPAATR 217
           ALE I  GF L D+ D +++ N+K   + P   P    G ++  ++    + G +    +
Sbjct: 289 ALEVISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEGK 348

Query: 218 HRTRWLSLCMARHHLPRGAWDFENGRGRWVRVSESLTPEGGRVGLLTDITETRKASEQVR 277
               W+   +  H  P G  D +    +WVR+S+   P+GG V + TDIT       Q++
Sbjct: 349 SPQEWVDERVRLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDIT-------QLK 401

Query: 278 QREQRLD 284
           QR+  L+
Sbjct: 402 QRQVELE 408



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 20  LDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTGEENRADSGP 79
           + +G  LY  + R++  N  +  +  +       G+   EI+         E+N      
Sbjct: 293 ISDGFVLYDSEDRILVANSKYCEIFPSHKPNTLRGRSFREIV---------EQNLEMGQV 343

Query: 80  DDDGRGTED--DAAERLEGALLGTPTEIRLGRDRWGLVHGHRLKDGALFCVLRDITASKA 137
           D +G+  ++  D   RL     G   E R G D+W  +   ++ DG    V  DIT  K 
Sbjct: 344 DLEGKSPQEWVDERVRLHRDPAGLVDEKRFG-DKWVRISKRKIPDGGTVAVYTDITQLKQ 402

Query: 138 GAARIAESNRRIREAESRLERALESI 163
               +  +      A     R L S+
Sbjct: 403 RQVELERAKSHAESANEAKSRFLASM 428