Pairwise Alignments

Query, 374 a.a., SMF protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 378 a.a., Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake from Xanthomonas campestris pv. campestris strain 8004

 Score =  189 bits (479), Expect = 1e-52
 Identities = 121/282 (42%), Positives = 162/282 (57%), Gaps = 9/282 (3%)

Query: 87  EADYPPALAAIEDAPPMFCLRGALGLLGKPMVAIVGARNASANGQRLAERLAADLGRSGL 146
           +ADYP  L  I + P M  + G    L  P VA+VG+R ASA G+      AA L  +GL
Sbjct: 85  DADYPALLRHIANPPLMLFVDGDPAALWHPCVAVVGSRAASAGGRDHTRHFAASLANAGL 144

Query: 147 VVVSGMARGVDSAAHVGALESG---TLAVVAGGVDVVYPPENDGLYRRLITEGAVISETA 203
            +VSGMA GVD+ AH  AL      T+AVV  G DV YP ++  L  R+    AV+SE  
Sbjct: 145 GIVSGMAAGVDAIAHEAALAHADGITVAVVGTGPDVAYPVQHHSLRDRIAARSAVVSEYL 204

Query: 204 PGEQPQARHFPRRNRIVSGLSLGVIVVEGAPRSGSLITARLAADQGREVMAVPGSPLDSR 263
           PG    A HFP RNRI++GL+LG +VVE A RSG+LITARLAA+ GREV AVPGS  +  
Sbjct: 205 PGTCAVAAHFPARNRIIAGLALGTLVVEAAMRSGALITARLAAEAGREVFAVPGSLHNPL 264

Query: 264 AQGPNGLIKNGAALIEDAADV---LRILSPLIARPMAE--DKPQNYASAPPSPIADSTID 318
           A+G + LI+ GA L+++ A +   LR+LS  +A  + +    P   A   P P    + D
Sbjct: 265 ARGCHHLIRQGATLVQEPAQLVEGLRLLSGELADALRQRLTAPTEQARTVPQPTPRRS-D 323

Query: 319 AARPRVIEALGMSPVGVDEVIRLCTLPPAVVAVVLLELELAG 360
               R+  ALG  P  +D ++    L  A ++ +LL +EL G
Sbjct: 324 PDYQRLWHALGHDPTPMDSLLERTGLTAAALSSMLLIMELEG 365