Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 639 a.a., diguanylate cyclase from Pseudomonas fluorescens FW300-N2E3

 Score =  431 bits (1109), Expect = e-125
 Identities = 235/589 (39%), Positives = 343/589 (58%), Gaps = 5/589 (0%)

Query: 244 WRCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVL 303
           W+     +W+  +A  +      +L + G    +  + + +  +R    VF    EG+++
Sbjct: 43  WQLINGYVWVVLSAGFIFTARARLLCFLGVGAKLRHRNEDRTRLRQAQAVFDCTREGVLV 102

Query: 304 LERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEI 363
            +R   +  VN AF  +TG   +++ G+   LF SG H  DF   +   + R   W GEI
Sbjct: 103 TDRQRVIVHVNRAFMDITGYQAEEVLGQSPSLFKSGHHPPDFYQAMFESLKRTREWSGEI 162

Query: 364 WGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPN 423
           W  R+ G  Y    T+  +    G+ +HYVA  +DI+  K  E  +   A+ D LT LPN
Sbjct: 163 WNRRKSGEIYPQWQTIRVIHDDHGQLSHYVAVFSDISAIKNSEHELAHLAHHDPLTDLPN 222

Query: 424 RHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVR 483
           R L  DR+EQA+  AQ   R   ++ +DLD FK INDS GH+ GD++LK TA RL+    
Sbjct: 223 RLLFSDRVEQALASAQIHKRGCALLMIDLDHFKMINDSLGHNVGDQLLKATAARLQGLFG 282

Query: 484 ISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFP 543
              ++ RLGGDEF V+  N       A +A++I+  L EPF I    +F   SVGI+ FP
Sbjct: 283 PGVTLARLGGDEFAVLAENCPQVVQAAALAQRIIEGLKEPFFIVAHPLFINASVGISLFP 342

Query: 544 DHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDEFEL 603
               +A  LLRNAD A++ AK  G   YA++T ++   +   + M  +LR AL + E  +
Sbjct: 343 SDALSAEQLLRNADSALFKAKNSGRDGYALYTEELTAHAQHRVEMAFELRRALEQQELRV 402

Query: 604 HFQPKVRADLT---LIGAEALIRWRHPEKGLINPGDFIPLAEESGLILPIGRWTLREACD 660
           ++QP    DLT   LIG EAL+RW+HP++GL+ PG+FIP+AE +GLI  I  W +++AC 
Sbjct: 403 YYQPV--HDLTTRRLIGVEALVRWQHPQRGLVPPGEFIPIAERTGLIAEIDAWVMQQACQ 460

Query: 661 RVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVETGLEPEALDLEITETVMTGDV 720
           ++ +W+  G+ +  V+VNVS R F  + L E V Q+L +TGL+P  L+LE+TE+ +  D 
Sbjct: 461 QMCAWQNAGVVLSFVAVNVSTRLFARRELFERVAQVLHDTGLDPACLELEVTESAVMDDP 520

Query: 721 EHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIV 780
           E A+  +  L++LGV L+IDDFGTGYSSL  LK  P+  LKIDQ FV  +     DAAIV
Sbjct: 521 EVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKIDQGFVAGLPLDEDDAAIV 580

Query: 781 STIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLYSRPLPPAE 829
             IIALA+++G  V AEG+E++EQA FL  + C   QG+ + RP+P  E
Sbjct: 581 RVIIALAQSMGMQVHAEGIEQVEQAAFLLDQGCDLGQGYWFGRPMPAHE 629



 Score = 32.3 bits (72), Expect = 9e-05
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 151 AQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFT 210
           A++   N  R    + +A+F+   EG+  +      + VN A   I GY +   L     
Sbjct: 74  AKLRHRNEDRTRLRQAQAVFDCTREGVLVTDRQRVIVHVNRAFMDITGYQAEEVL----- 128

Query: 211 DIASQLYVDGTKRGEFQRLMRET-GEVRDFTAEVW--RCDGHTIWITENARCVRGPDNEV 267
             +  L+  G    +F + M E+    R+++ E+W  R  G      +  R +     ++
Sbjct: 129 GQSPSLFKSGHHPPDFYQAMFESLKRTREWSGEIWNRRKSGEIYPQWQTIRVIHDDHGQL 188

Query: 268 LYYEGTVEDITAQRQSQETM 287
            +Y     DI+A + S+  +
Sbjct: 189 SHYVAVFSDISAIKNSEHEL 208