Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 955 a.a., diguanylate cyclase from Pseudomonas fluorescens FW300-N2E3

 Score =  427 bits (1097), Expect = e-123
 Identities = 236/611 (38%), Positives = 347/611 (56%), Gaps = 4/611 (0%)

Query: 234 GEVRDFTAE--VWRCDGHTIWITENARCV-RGPDNEVLYYEGTVEDITAQRQSQETMRLL 290
           G   D+  E  V   DGH +WI +  R V RG +  V+   GT  DI+  +  +E  +L 
Sbjct: 345 GRTEDYQIEYRVRHGDGHWVWIEDRGRAVERGANGRVIRMVGTRRDISVSKGLEEQRQLA 404

Query: 291 GKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATVA 350
             VF + +EGIV+ + D  +  VN AF  +TG   +D+ GR               + + 
Sbjct: 405 ATVFEAASEGIVIFDPDYALIAVNQAFSRVTGYQIEDLLGRNVVELPCSRDARRHYSVIH 464

Query: 351 AEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIR 410
             +++ G W+GE+   R+ G  Y   + + AVR   G  +H V    D++ R+  EE +R
Sbjct: 465 QALEQQGSWQGELVEARKNGELYPQWLQLNAVRDTRGNVSHIVGFFADLSARRESEERMR 524

Query: 411 FQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEV 470
           +  ++D LT L NR L  +RL +A  + ++ GR + ++ ++LDRFK +NDS GH   D++
Sbjct: 525 YLTHYDELTGLANRSLFRERLHEAHQRVRQGGRSLALLHINLDRFKLLNDSLGHEVADQM 584

Query: 471 LKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTE 530
           L+  ARRL N +  +D++ RL GDEF V+     +  + A +A ++   L  P  + G E
Sbjct: 585 LQKIARRLVNALPEADTIARLSGDEFAVLFDAYGNLSSLARVATRLSTKLRLPLTVEGHE 644

Query: 531 VFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMES 590
           +    S+GI+  PD+      L+  +++AM HAK  G   +  +T  +   +L  L +E+
Sbjct: 645 LVVSASMGISMLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLERLQLEN 704

Query: 591 DLRHALARDEFELHFQPKV-RADLTLIGAEALIRWRHPEKGLINPGDFIPLAEESGLILP 649
            LR A+   + ++ +QPK+  A   L  AEAL+RW HP  G + PGDFI LAEE GLI  
Sbjct: 705 QLRKAIEEKQLKVFYQPKLCLATGRLNAAEALVRWDHPTMGQVPPGDFIGLAEEVGLIGA 764

Query: 650 IGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVETGLEPEALDL 709
           IG + LR+AC +   W+ +GL    VSVN+S  Q +   LV  VRQ+L ETGL P  L+L
Sbjct: 765 IGEFVLRQACWQACEWQRQGLEPIRVSVNLSVHQLRQGKLVSLVRQVLEETGLAPHYLEL 824

Query: 710 EITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLKIDQTFVRD 769
           E+TE+ +   VEH + T + L+DLGV L+IDDFGTGYSSL+YLK  P+D +KIDQ F+R 
Sbjct: 825 ELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRG 884

Query: 770 VLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLYSRPLPPAE 829
           +   G+DAAI   IIA+A  L   VVAEGVE  EQ  FL +  C   QG+L SRP+   +
Sbjct: 885 LGEGGEDAAITRAIIAMAHGLSLKVVAEGVETAEQLAFLEAESCDEVQGYLISRPVEAFK 944

Query: 830 FTTFLRTAKLE 840
             + LR  + E
Sbjct: 945 LASLLRGERPE 955



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 45/168 (26%), Positives = 68/168 (40%), Gaps = 32/168 (19%)

Query: 136 NGPHPLLVVITRDMTAQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALAR 195
           NG    +V   RD++     E   + A      +FE A EGI    PD   + VN A +R
Sbjct: 378 NGRVIRMVGTRRDISVSKGLEEQRQLAA----TVFEAASEGIVIFDPDYALIAVNQAFSR 433

Query: 196 IYGY-------------ASPAELIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAE 242
           + GY                 +   H++ I   L   G+ +GE     R+ GE+      
Sbjct: 434 VTGYQIEDLLGRNVVELPCSRDARRHYSVIHQALEQQGSWQGELVE-ARKNGEL------ 486

Query: 243 VWRCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLL 290
                 +  W+  NA  VR     V +  G   D++A+R+S+E MR L
Sbjct: 487 ------YPQWLQLNA--VRDTRGNVSHIVGFFADLSARRESEERMRYL 526