Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1494 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  437 bits (1124), Expect = e-126
 Identities = 240/596 (40%), Positives = 346/596 (58%), Gaps = 3/596 (0%)

Query: 248  GHTIWITENARCV-RGPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLER 306
            GH IWIT+  + V R    + +   GT +DIT+++ ++  +RL  +V  S+ E +V+   
Sbjct: 900  GHWIWITDRGKVVERDKQGKPVRMVGTHKDITSRKNAENELRLSAQVLASMNEAVVVGGL 959

Query: 307  DLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGE 366
            D  + +VNPAF  +TG   + ++G+          +      +  ++ R   W GE+   
Sbjct: 960  DYRIASVNPAFSLITGFNPEQVQGKHFLFLTHDRKQRHIYEAIEQQLLRNKHWAGELKIR 1019

Query: 367  RREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHL 426
             R+       + +  V     E +H+VA  TDIT RK+ EE +R  A++D LT+LPNR L
Sbjct: 1020 TRDQRAILIWLEINQVLDSKAEASHFVAVFTDITDRKKAEEDLRLLASYDPLTNLPNRTL 1079

Query: 427  IMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISD 486
              DRL+ A+ QA RTG  V ++FLDLDRFK INDS GH  GD +LK  A RL+NCVR  D
Sbjct: 1080 FQDRLDHALAQAHRTGNMVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQNCVREGD 1139

Query: 487  SVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHG 546
            +V RLGGDEF +IL  V    A   IAEK++ +   PF +    +   PS+GI+ +P   
Sbjct: 1140 TVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFILEDQALNISPSIGISLYPMDA 1199

Query: 547  ETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQ 606
              +  L++ AD AMYHAK  G   +  +T  +   ++  + +E+ ++ A+ R E  L FQ
Sbjct: 1200 SDSTSLVKYADTAMYHAKSLGRNNFQFYTLRLNEYAMRHVQLEAGIKQAIVRQELSLVFQ 1259

Query: 607  PKVR-ADLTLIGAEALIRWRHPEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSW 665
            PK R +D ++ G EAL+RW   E G I+P +FIPLAEE G+I  +G W + EAC  +  +
Sbjct: 1260 PKFRVSDGSITGFEALLRWNSKELGPISPAEFIPLAEEIGIINQLGHWVVNEACRHMAQF 1319

Query: 666  RAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVG 725
             A G     V+VN+S RQ +   ++ T+   L   GL  + L+LE+TE+++    + +V 
Sbjct: 1320 AAAGFDDLHVAVNLSARQLK-ADILSTIEVALAVAGLPAKCLELELTESMIMKSPQESVA 1378

Query: 726  TLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIA 785
             L+ LK LGV+L++DDFGTGYSSL YLK FP+DTLKID+ FVRD+     DAAI   IIA
Sbjct: 1379 VLQRLKALGVSLAVDDFGTGYSSLAYLKRFPLDTLKIDREFVRDISTDPDDAAITGAIIA 1438

Query: 786  LARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLYSRPLPPAEFTTFLRTAKLET 841
            LA +L  +VVAEGVE   Q E L    C   QGFL  +P+   +    L++  L T
Sbjct: 1439 LAHSLELNVVAEGVENEAQLEHLRKHGCDQVQGFLLGKPMAARDAMALLKSRTLNT 1494