Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 578 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  434 bits (1117), Expect = e-126
 Identities = 233/556 (41%), Positives = 341/556 (61%), Gaps = 9/556 (1%)

Query: 284 QETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHEN 343
           ++   L GK F +  EGI++ +    +  VN  FE +TG    D+ G+  R+ ASG H+ 
Sbjct: 5   EQLQALKGKAFDASGEGILITDPRGVILAVNKKFEEITGYSSVDVLGQTPRILASGRHDE 64

Query: 344 DFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRK 403
            F   +   V   GLW G IW  RR G  Y  + +++AV  R G    Y+  + DIT +K
Sbjct: 65  AFYRDMWDLVMEQGLWSGLIWNRRRTGDEYLEQFSISAVYARDGTVEGYIGVMRDITDQK 124

Query: 404 RDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYG 463
             E+ I++ A+ D+LT L NRH +  RLE+A+  A+R   ++ +MFLDLDRFKQIND  G
Sbjct: 125 LQEDRIKYLASHDVLTGLLNRHALDTRLERAILHAKRRQARLALMFLDLDRFKQINDILG 184

Query: 464 HSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAG-AYIAEKILYSLSE 522
           H  GDE+LK  A+RLR CVR  D++ R GGDEFI++L ++ED     A+ A++I+ SL++
Sbjct: 185 HDVGDELLKTVAQRLRECVREEDTIARQGGDEFILLLEDLEDNKGSIAHTAQRIIDSLAK 244

Query: 523 PFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRS 582
            F I G  +    S+GI  +P++G T  +L+++AD+AMYHAK  G   +  F  ++  + 
Sbjct: 245 DFEIMGCALSASASIGIALYPENGHTQAELVKHADLAMYHAKASGRGNFQFFNAELDAQV 304

Query: 583 LALLTMESDLRHALAR--DEFELHFQPKVR-ADLTLIGAEALIRWRHPEKGLINPGDFIP 639
              + +ESDLR A+A    +F LH+QPK+  A   ++  EALIRW HP+ G++ P +FI 
Sbjct: 305 RQNVALESDLRAAIAAGGQQFVLHYQPKINLATGRVVSLEALIRWHHPQLGMVPPAEFIT 364

Query: 640 LAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVE 699
           LAE+  LI P+ RW + E   ++  W  + L    V++N+SP QF+    VE + +I   
Sbjct: 365 LAEDVHLITPLSRWLVGEVAAQITRWGDDAL---PVAINISPAQFRQANFVEELLEITGS 421

Query: 700 TGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDT 759
            G+ P  ++LEITE V   D+E+A+ TL+A +D G  +++DDFGTGYSSL YL + PID 
Sbjct: 422 HGVPPGMIELEITEGVFINDMENAIKTLQAARDTGFRVALDDFGTGYSSLRYLVSLPIDV 481

Query: 760 LKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGF 819
           LKID++FV D   +    AIV  ++ L + LG  +VAEGVE +EQA +L    C   QG+
Sbjct: 482 LKIDRSFVSD--QNQVCMAIVRFLVNLGQELGVEIVAEGVETLEQAHYLYKAGCTVGQGY 539

Query: 820 LYSRPLPPAEFTTFLR 835
           L+SRPLP A+   FLR
Sbjct: 540 LFSRPLPVADVLPFLR 555



 Score = 31.2 bits (69), Expect = 2e-04
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 159 LRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYV 218
           L+A +GK    F+ + EGI  + P G  L VN     I GY+S   L      +AS  + 
Sbjct: 7   LQALKGK---AFDASGEGILITDPRGVILAVNKKFEEITGYSSVDVLGQTPRILASGRHD 63

Query: 219 DGTKRGEFQRLMRETGEVRDFTAEVW--RCDGHTIWITENARCVRGPDNEVLYYEGTVED 276
           +   R  +  +M    E   ++  +W  R  G       +   V   D  V  Y G + D
Sbjct: 64  EAFYRDMWDLVM----EQGLWSGLIWNRRRTGDEYLEQFSISAVYARDGTVEGYIGVMRD 119

Query: 277 ITAQRQSQETMRLL 290
           IT Q+  ++ ++ L
Sbjct: 120 ITDQKLQEDRIKYL 133