Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 651 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  447 bits (1150), Expect = e-130
 Identities = 238/581 (40%), Positives = 347/581 (59%), Gaps = 2/581 (0%)

Query: 267 VLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQ 326
           +LY  GT  ++ A R     + L   VF++  EGIV+ + +  V  VNPAF  +TG    
Sbjct: 69  LLYRSGTPRELAACRDYVHRLNLASAVFSAAREGIVVTDLEGRVEAVNPAFCQITGYGEA 128

Query: 327 DMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRA 386
           +++G   RL  SG  +  F   +  ++  +G W+GEIW  R+ G  Y   +T++ VR  A
Sbjct: 129 ELQGFNLRLLKSGRQDGAFYRQLWRDLLESGHWQGEIWNRRKNGETYPQWLTISTVRDEA 188

Query: 387 GETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVC 446
            +   YV    D++  +R E+ +   A+ D LT LPNR L + RLE A+  + R G    
Sbjct: 189 HQPVSYVGVFLDLSPIRRSEQKLLHLAHHDPLTDLPNRTLFLARLEHALSLSAREGGSGA 248

Query: 447 VMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQ 506
           V+FLDLDRFK +NDS GH  GD +L   A RLR C+R SD++ RLGGDEF+++L      
Sbjct: 249 VLFLDLDRFKDVNDSLGHPTGDRLLCAVAERLRPCLRESDTLARLGGDEFLLLLETAATP 308

Query: 507 HAGAYIAEKILYSLSEPFPIGG-TEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQ 565
              A +AEK+L  L+ PF +   +EV+   S+GI  +P  G+ A  L+++AD A+Y AK 
Sbjct: 309 ERAAVVAEKLLEQLAAPFRLDDRSEVYVGASIGICLYPADGDNATTLIQHADSALYQAKA 368

Query: 566 GGERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVRA-DLTLIGAEALIRW 624
            G   +  ++    R++ A L +E+ LR  L ++EF L++QP+V     +L G EAL+RW
Sbjct: 369 AGRHTFRFYSEAQTRQADARLALEAALRRGLEKEEFLLYYQPQVDLRTASLEGVEALVRW 428

Query: 625 RHPEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQF 684
           R P   L+ P  FIPLAEE+GLILP+G W LR+AC ++  W A GL I  V+VN+S RQF
Sbjct: 429 RLPGGELVPPARFIPLAEETGLILPLGEWVLRQACRQMQQWVARGLPIRRVAVNLSSRQF 488

Query: 685 QDQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGT 744
           +   L++ +  IL ETGL P  L+LEITE+++  +       L AL+ +G+ L+IDDFGT
Sbjct: 489 RQADLLQRINAILAETGLAPRYLELEITESLLMDNSAQVDAKLEALEAMGIRLAIDDFGT 548

Query: 745 GYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQ 804
           GYSSL+YLK FP+ TLK+D++F+RD+      + IV++II L ++L   ++AEGVE  +Q
Sbjct: 549 GYSSLSYLKRFPLHTLKLDRSFIRDIADDPVSSNIVASIIELGQHLDMDILAEGVETDQQ 608

Query: 805 AEFLGSRDCQNFQGFLYSRPLPPAEFTTFLRTAKLETATPP 845
              L    C+  QG+L+S PLP  E       A  +   PP
Sbjct: 609 RGILLQNGCRTCQGYLFSHPLPAEELEARWLRAAADLGVPP 649



 Score = 41.6 bits (96), Expect = 2e-07
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 168 AIFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGEFQ 227
           A+F  A EGI  +  +G    VNPA  +I GY       A       +L   G + G F 
Sbjct: 94  AVFSAAREGIVVTDLEGRVEAVNPAFCQITGYGE-----AELQGFNLRLLKSGRQDGAFY 148

Query: 228 R-LMRETGEVRDFTAEVW--RCDGHTI--WITENARCVRGPDNEVLYYEGTVEDITAQRQ 282
           R L R+  E   +  E+W  R +G T   W+T +   VR   ++ + Y G   D++  R+
Sbjct: 149 RQLWRDLLESGHWQGEIWNRRKNGETYPQWLTIST--VRDEAHQPVSYVGVFLDLSPIRR 206

Query: 283 SQETM 287
           S++ +
Sbjct: 207 SEQKL 211