Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 959 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  498 bits (1283), Expect = e-145
 Identities = 262/568 (46%), Positives = 363/568 (63%), Gaps = 7/568 (1%)

Query: 282 QSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLH 341
           ++   ++L  +VF S  EG+V+ + D  + TVN AF  +TG   +++ G+   +F+SG H
Sbjct: 395 ENARDLKLAAQVFESGNEGMVITDGDNRIITVNQAFTRITGYRPEEVVGQNPAIFSSGRH 454

Query: 342 ENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITK 401
           + DF   +  ++   G W GEIW  R++G  Y   + +++VR   G+ +HY+AA +DIT+
Sbjct: 455 DADFYRQMWHQLRDTGAWSGEIWNRRKDGSLYPEWLNISSVRDEGGQASHYIAAFSDITE 514

Query: 402 RKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDS 461
           RK  E  +R  A +D LT+LPNR L+ DRL QA+  A+R G  + ++FLDLDRFK INDS
Sbjct: 515 RKAAEAQVRHLAEYDALTNLPNRVLLQDRLGQAIAAARRAGSCLALLFLDLDRFKNINDS 574

Query: 462 YGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLS 521
            GH+ GD+VL     RL   VR SD+V RLGGDEF+++L  +E     A +AEK+L +L+
Sbjct: 575 LGHTVGDQVLCQVGERLLTAVRASDTVSRLGGDEFVLLLPQLESPAQAASVAEKLLLTLA 634

Query: 522 EPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARR 581
            P  I   E+   PS+GI  FP+ GE    LL+NAD AMY AK+ G   Y  FT  M  R
Sbjct: 635 TPLAIDDYELAVTPSIGIAVFPEDGEDGDTLLKNADAAMYVAKESGRNNYQYFTAAMNAR 694

Query: 582 SLALLTMESDLRHALARDEFELHFQPKVRADL---TLIGAEALIRWRHPEKGLINPGDFI 638
               L +E++LR ALAR E  LH+QP+   DL   TL+G EAL+RWR PE+GLI P  FI
Sbjct: 695 VSQRLLLENNLRQALARQELALHYQPQY--DLHSGTLVGCEALLRWRQPEQGLIPPDRFI 752

Query: 639 PLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILV 698
           P+AEE+GLILPIG+W LREAC +  +W+  GL    V+VN+S  QF+   L   V++ L 
Sbjct: 753 PVAEETGLILPIGQWVLREACRQAQAWQDAGLPPLVVAVNISAVQFRQANLAALVQEALA 812

Query: 699 ETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYLKTFPID 758
            +GL P  L+LE+TE+++  D E    TL  LK +G+ L++DDFGTGYSSL YLK F +D
Sbjct: 813 ASGLSPCWLELELTESMLMEDGERHTQTLAQLKAMGIRLALDDFGTGYSSLAYLKRFSLD 872

Query: 759 TLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQG 818
            LKID++F+RD+    +DAAI + II +AR+LG   +AEGVE  +Q  FL  R C   QG
Sbjct: 873 KLKIDRSFIRDLPQDAEDAAITTAIIGMARDLGLETLAEGVETEQQWSFLAERGCAQMQG 932

Query: 819 FLYSRPLPPAEFTTFLRTAKLETATPPD 846
           FL +RP+P  E T  L   +  +ATPP+
Sbjct: 933 FLRARPMPADEITALL--GRHGSATPPN 958



 Score = 43.5 bits (101), Expect = 6e-08
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 169 IFENAVEGIYQSTPDGTYLDVNPALARIYGYASPAELIAHFTDIASQLYVDGTKRGEFQR 228
           +FE+  EG+  +  D   + VN A  RI GY  P E++     I S    D     +   
Sbjct: 406 VFESGNEGMVITDGDNRIITVNQAFTRITGY-RPEEVVGQNPAIFSSGRHDADFYRQMWH 464

Query: 229 LMRETGEVRDFTAEVW--RCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQET 286
            +R+TG    ++ E+W  R DG       N   VR    +  +Y     DIT ++ ++  
Sbjct: 465 QLRDTGA---WSGEIWNRRKDGSLYPEWLNISSVRDEGGQASHYIAAFSDITERKAAEAQ 521

Query: 287 MRLLGK--VFTSIAEGIVLLER 306
           +R L +    T++   ++L +R
Sbjct: 522 VRHLAEYDALTNLPNRVLLQDR 543