Pairwise Alignments
Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H
Subject, 896 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Score = 464 bits (1194), Expect = e-134
Identities = 250/569 (43%), Positives = 346/569 (60%), Gaps = 1/569 (0%)
Query: 274 VEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPA 333
V DI+ +R ++ RL +VF + EGI + + + + VNPAF +TG D G+
Sbjct: 319 VHDISGRRTAERQARLFERVFRNALEGICITDPEGIIVAVNPAFTTITGYPADDAVGQSP 378
Query: 334 RLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYV 393
RL S H++ F + + G W EIW RR G Y ++++A+ G T +YV
Sbjct: 379 RLLKSHHHDSAFYEDMWRALVEEGRWEDEIWNRRRNGEVYPEWLSISAIPGPTGRTEYYV 438
Query: 394 AAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLD 453
A DIT+ K E I+ QA+ D LT LPNR L+ DRL A++ A+R R+V V+ +DLD
Sbjct: 439 AVFHDITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDRKVAVLSVDLD 498
Query: 454 RFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIA 513
FKQ+NDS GH GD L+ A ++R VR D++ R+GGDEF+V+L +VE + A +A
Sbjct: 499 NFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQVA 558
Query: 514 EKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAI 573
E++L ++P + E+F SVGI FPD G+ L+RNAD+AM AK+ G+RRY +
Sbjct: 559 ERLLARFTDPVRVQEHELFVGASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRYHL 618
Query: 574 FTPDMARRSLALLTMESDLRHALARDEFELHFQPKVRADLTLI-GAEALIRWRHPEKGLI 632
FTP M R++ L++E DL ALA + H+QP+V + LI G EAL RW +
Sbjct: 619 FTPAMNDRAVRRLSLEGDLHRALAAGDITAHYQPRVDLNTGLITGMEALARWIRADGSQE 678
Query: 633 NPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVET 692
+P +FIPLAE +GLI+P+G LR AC + + G V+VN+S QF+ + LV
Sbjct: 679 HPAEFIPLAESTGLIVPLGEHMLRLACAKTRALCDAGHADLHVAVNLSVHQFRHRNLVGM 738
Query: 693 VRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLNYL 752
V +L ETGL P L+LEITE+ + DV+H + L L ++G+ LS+DDFGTGYSSL L
Sbjct: 739 VADVLAETGLPPHLLELEITESTIVTDVDHTIRKLNQLAEMGIALSVDDFGTGYSSLYQL 798
Query: 753 KTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLGSRD 812
K P+ +LKID++F+RD+ DAAI +TII +A LG VVAEGVE EQ FL
Sbjct: 799 KNLPLTSLKIDRSFIRDIPDDPNDAAIAATIITMADRLGLRVVAEGVETPEQLNFLLLEG 858
Query: 813 CQNFQGFLYSRPLPPAEFTTFLRTAKLET 841
C QGFL+SRPLPP EFT L +L T
Sbjct: 859 CHEVQGFLFSRPLPPDEFTALLARGRLLT 887
Score = 49.7 bits (117), Expect = 8e-10
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 138 PHPLLVVITRDMTAQVAAEN--ALRAAEGKYRA---IFENAVEGIYQSTPDGTYLDVNPA 192
P PL ++ + MTA V + R AE + R +F NA+EGI + P+G + VNPA
Sbjct: 302 PLPLSLLRGKGMTALVVVHDISGRRTAERQARLFERVFRNALEGICITDPEGIIVAVNPA 361
Query: 193 LARIYGY-------ASPAELIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVW- 244
I GY SP L +H D S Y D R + E G D E+W
Sbjct: 362 FTTITGYPADDAVGQSPRLLKSHHHD--SAFYED------MWRALVEEGRWED---EIWN 410
Query: 245 -RCDGHTI--WITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMR 288
R +G W++ +A + GP YY DIT + + ++
Sbjct: 411 RRRNGEVYPEWLSISA--IPGPTGRTEYYVAVFHDITELKAKESQIQ 455
Score = 35.0 bits (79), Expect = 2e-05
Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 35/208 (16%)
Query: 25 GDGPAPSIAEGLSAALFQSVVEALPVGTALLRDG-----VIVHANATLAGQIGETIDTLI 79
G + S GL AL + + AL LRDG H A LAG G+ + +
Sbjct: 39 GQNTSGSQTPGLLRALLDNPLVAL-----FLRDGEGRYLAANHLYADLAGVPGKDV---V 90
Query: 80 GSPLTSYLTPAD----ALAVQKVVEGAIALHGGVPV--RRIAHIRHISGSERVYSLRFSP 133
G L+P D A+A + E P+ R+ RV L P
Sbjct: 91 G------LSPRDIFPHAVASALLDEDRRVAEDSTPLLCERMLPADEAERVFRVAKLPLPP 144
Query: 134 LDNGPHPLLVVITRDMTAQVAAE---------NALRAAEGKYRAIFENAVEGIYQSTPDG 184
GP +L + D+TA V AE AL + ++RA+FE A + +Y G
Sbjct: 145 EVAGPGAVLG-LAFDVTALVEAEIEEEVRQRTAALAESTARFRALFELAPDAVYVRGEGG 203
Query: 185 TYLDVNPALARIYGYASPAELIAHFTDI 212
+D N A R+ G+ L D+
Sbjct: 204 RIVDCNRAAERMSGHPRETLLSLRTADL 231