Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1228 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  430 bits (1106), Expect = e-124
 Identities = 249/694 (35%), Positives = 383/694 (55%), Gaps = 6/694 (0%)

Query: 143  VVITRDMTAQVAAENALRAAEGKYRAIFENAVEG-IYQSTPDGTYLDVNPALARIYGYAS 201
            + +++++      +  L  +E +YR +F+ A  G   +   DG ++ +N A   I GY  
Sbjct: 535  MALSKEIARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMEITGYTL 594

Query: 202  PAELIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVR 261
              EL A      + +    ++  + +RL ++T     +       DG  + +  N   V 
Sbjct: 595  E-ELQAIDPWELTPIRYQSSETEQLERL-KQTRRYGPYQKHYRHKDGQLVAVRLNGSLVT 652

Query: 262  GPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMT 321
              + E L     VEDIT Q ++   + LL +VF    EGI +++ +  +  VN AF  +T
Sbjct: 653  AANGEQLILF-IVEDITEQERTVARVNLLAQVFQQSGEGITIMDANDIIVDVNSAFTQIT 711

Query: 322  GLLRQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTA 381
            G  R ++ G+  R   +   +    A V A +++ G W+GE+W   +EG  +   + ++ 
Sbjct: 712  GYSRDEIIGKNCRFLEAERTDRSIDAQVRAALEQTGFWQGEVWDRHKEGFDFPKWLMMSI 771

Query: 382  VRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRT 441
            VR   G  +HY+ + TDI++RK +EE I F A+ D LT LPNR  +  RLE+   +A  +
Sbjct: 772  VRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSLQSRLEKVFQEAFIS 831

Query: 442  GRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILS 501
              Q+ VMF+D+D FK IND+ GH  GD +L   ARRL+N +   D V RLGGDEF+V+LS
Sbjct: 832  QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGNDDIVARLGGDEFVVVLS 891

Query: 502  NVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAPDLLRNADVAMY 561
            + +     A +AE +   L++ + I    +   PS+GI+ FP  G++   L++NAD+AMY
Sbjct: 892  DTDHDRV-AKVAEALRSGLNQTYLIDNKPLHSSPSIGISLFPTDGDSVEALMKNADMAMY 950

Query: 562  HAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVRADL-TLIGAEA 620
             AK  G   Y  FT  M         +E+ LR A+A +E  L++QP+V      ++G EA
Sbjct: 951  RAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIACNELLLYYQPQVDISSGQVVGVEA 1010

Query: 621  LIRWRHPEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVS 680
            LIRW+HPE GL+ P  FIP+AEE  +I+PIG+W L  A  ++  WR +G     ++VN+S
Sbjct: 1011 LIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLENALAQLAEWRDKGAKGLRMAVNLS 1070

Query: 681  PRQFQDQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSID 740
              Q +  T+V  +  +L +  L   AL+LEITE+V     E     L  L+  G+ L+ID
Sbjct: 1071 AHQLRKDTIVADIINVLTKHKLGKGALELEITESVAMQYPEQNAKLLAELRQHGIELAID 1130

Query: 741  DFGTGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVE 800
            DFGTGYSSL+YLK  P+D LK+D++FV+D+     DAAI +  I++A  LG +VVAEGVE
Sbjct: 1131 DFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAATISMAHELGLTVVAEGVE 1190

Query: 801  EIEQAEFLGSRDCQNFQGFLYSRPLPPAEFTTFL 834
               Q   L    C   QG+ +S+PL   +   F+
Sbjct: 1191 NEAQLVLLSGMGCDLVQGYYFSKPLAADDCFRFI 1224