Pairwise Alignments

Query, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  439 bits (1128), Expect = e-127
 Identities = 232/568 (40%), Positives = 337/568 (59%), Gaps = 2/568 (0%)

Query: 272 GTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQDMEGR 331
           G   +I+  ++ +E + L   VF    EG+V+ +R   +  VN AF  +TG  R+++ G+
Sbjct: 311 GMTRNISKHKEVEEQLTLATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQ 370

Query: 332 PARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTH 391
             RLF SG HE  F   +   +   G W GEIW  R++G  +   +T++ +    G+  +
Sbjct: 371 NPRLFNSGRHEKAFFDAMWNHLLETGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRY 430

Query: 392 YVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLD 451
           +VA  +DI+ +K+ E  +   A FD LTHLPNR  +M +L+Q +  A+R   Q+  +F+D
Sbjct: 431 FVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFID 490

Query: 452 LDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAY 511
           +D FK INDS+GHS GDE+L   A+RLR+ ++  D + R+GGDEF+ ++S ++     A 
Sbjct: 491 VDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAA 550

Query: 512 IAEKILYSLSEPFPIG-GTEVFCIPSVGITYFPDHGETAPDLLRNADVAMYHAKQGGERR 570
              ++     +PF +  G  +    S+G++ +PD G  A  LLRNAD AMY AK  G   
Sbjct: 551 AINQLRQVFEQPFVVSTGDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNN 610

Query: 571 YAIFTPDMARRSLALLTMESDLRHALARDEFELHFQPKVR-ADLTLIGAEALIRWRHPEK 629
           +A +T  + ++S   L ++S L  AL ++   L +QPK+       IG EAL+RW  P  
Sbjct: 611 FAFYTESLTKQSFEHLKLQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPIL 670

Query: 630 GLINPGDFIPLAEESGLILPIGRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTL 689
           G I+PG FIP+AE+ GLI  IG W L  AC + + W  EG     ++VNV+ +Q Q  + 
Sbjct: 671 GQISPGVFIPVAEKIGLIYDIGLWVLETACLQGVRWLTEGKPFGRIAVNVAGQQLQRSSF 730

Query: 690 VETVRQILVETGLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSL 749
           VE V++IL +TGL    L+LE+TE+VM  + + A+  L+ L DLG+ LS+DDFGTGYSSL
Sbjct: 731 VEDVKRILTQTGLPATCLELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSL 790

Query: 750 NYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVEEIEQAEFLG 809
           NYLK  PI  LKIDQ+FVRD+     + AI   +IAL   L   +VAEGVE   QAEFL 
Sbjct: 791 NYLKKLPIHKLKIDQSFVRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLT 850

Query: 810 SRDCQNFQGFLYSRPLPPAEFTTFLRTA 837
              C   QG+L+SRPL PA+   FL  A
Sbjct: 851 QNLCDQAQGYLFSRPLLPADVEAFLAKA 878



 Score = 37.7 bits (86), Expect = 3e-06
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 12/146 (8%)

Query: 142 LVVITRDMTAQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYAS 201
           ++ +TR+++     E  L  A      +F++ +EG+  +   G   DVN A   I GY S
Sbjct: 309 VIGMTRNISKHKEVEEQLTLATN----VFKHTLEGVVITDRHGNITDVNGAFYEITGY-S 363

Query: 202 PAELIAHFTDIASQLYVDGT-KRGEFQRLMRETGEVRDFTAEVW--RCDGHTIWITENAR 258
             EL+        +L+  G  ++  F  +     E   +  E+W  R DG          
Sbjct: 364 REELLGQ----NPRLFNSGRHEKAFFDAMWNHLLETGKWNGEIWNRRKDGTIFPQNITIS 419

Query: 259 CVRGPDNEVLYYEGTVEDITAQRQSQ 284
            +     +V Y+     DI+AQ+QS+
Sbjct: 420 TIYDELGDVRYFVAVFSDISAQKQSE 445