Pairwise Alignments
Query, 933 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H
Subject, 1200 a.a., TonB-dependent receptor protein from Sinorhizobium meliloti 1021
Score = 58.5 bits (140), Expect = 2e-12
Identities = 68/247 (27%), Positives = 98/247 (39%), Gaps = 9/247 (3%)
Query: 541 NAGDSAMAMIAAAVANKRNDL---VAVEKWLRQALERDPANMEAASNLASLLTSTSRPQA 597
NA M A A R D+ +AV K Q DP A + LA LL +
Sbjct: 335 NASGRYAGMARAWTAGFREDIPAAIAVIKKAEQQYPDDPTLPAARAQLALLLDDRDELRD 394
Query: 598 AIIVAQDALRISPDTPAVMEALGKAQLLI-GDYTAAADVLRRAVAIKP-SGLTYYLLATA 655
+ + AL I PD P +EA + I D A L RA+ P S + L
Sbjct: 395 GV---ERALSIDPDDPTALEARAHYRYHIDNDLEGALADLERALKTAPGSSSIWNSLGLV 451
Query: 656 YLNLNDPPRLKEALESVVKLQPDHVDSRVMLATMIVDGGSLSDAKTAVEGVTTDFPGDPR 715
D + A + + L P S LA +D +++AK ++ + P
Sbjct: 452 QGARGDNRAAEAAFKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFDV 511
Query: 716 AQEVRARYLAKAEGPASAITFLEASLTDPNTRPRNLVMLLASAYNEKGDGAKASSLLEDW 775
A R RY + A+ L A T N N +LLA+A+ EKGD A+ L++
Sbjct: 512 ALVARGRYHMQNGEADKAVEDLLAGST-ANPAYSNAQLLLAAAHYEKGDRIPAAQALDNA 570
Query: 776 VAKNPDD 782
+P+D
Sbjct: 571 DRLDPND 577
Score = 58.5 bits (140), Expect = 2e-12
Identities = 62/229 (27%), Positives = 94/229 (41%), Gaps = 6/229 (2%)
Query: 156 RLALDKALDIDPADKDALIGAAQIETMAGHQ-DAARALLARAAAAAPDDVDVLVAQADTA 214
R +++AL IDP D AL A + + A A L RA AP + +
Sbjct: 393 RDGVERALSIDPDDPTALEARAHYRYHIDNDLEGALADLERALKTAPGSSSIWNSLGLVQ 452
Query: 215 LSANDPAAAEGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIPAHPWA 274
+ D AAE F QA A PL+P+ +LA ++ + AEA++ ++ L+ P+ A
Sbjct: 453 GARGDNRAAEAAFKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFDVA 512
Query: 275 LYLRGLTAYRTNDMTAADKDLTAALALAKTLRPAIFLAGVVKYNIGEYEQASRLLAGLTE 334
L RG + + A +DL A A L Y G+ A++ L
Sbjct: 513 LVARGRYHMQNGEADKAVEDLLAGSTANPAYSNAQLLLAAAHYEKGDRIPAAQALDNADR 572
Query: 335 TEGKSNKTADAVRAAALLKLGRDDESYR----LLRPLAAGDGETADLYA 379
+ ++ VR A + D + R LR A G+TA L A
Sbjct: 573 LD-PNDPVVATVRTAIAIDAYDADAAIRNAQEALRRTRAKGGDTAALGA 620
Score = 52.8 bits (125), Expect = 1e-10
Identities = 102/393 (25%), Positives = 151/393 (38%), Gaps = 35/393 (8%)
Query: 266 ADIPAHPWA------LYLRGLTAYRTNDMTAADKDLTAALALAKTLRPAIFLAGVVKYNI 319
A PA W L L G + AA + LT + A L A+ +AG +
Sbjct: 234 ASRPAEEWLTLAEIYLSLNGRDKAQAALAEAASRGLTRSQAARADLVKAL-IAG----SS 288
Query: 320 GEYEQASRLLAGLTETEGKSNKTADAVRAAALLKLGRDDESYRLLRPLAAGDGETADLYA 379
YE+A+RL A S T A G D + R+ P G A +
Sbjct: 289 NRYEEAARLFARAERGLDPSRLTIAAY--GGYFARGLADPA-RVEEPPRNASGRYAGMAR 345
Query: 380 M--AAVAAQGAAAMADSEGYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAE 437
A AA+A +KA PDDP L + L D D + RA
Sbjct: 346 AWTAGFREDIPAAIA----VIKKAEQQYPDDPTLPAARAQLALLLDDRDELRDGVERALS 401
Query: 438 LEGDDKKALLLLFSSLLQKKDFDKAEALAGDTKRKY---PDRAWGWTMDGMIQASRGDTA 494
++ DD AL + D D ALA D +R P + W G++Q +RGD
Sbjct: 402 IDPDDPTALEAR-AHYRYHIDNDLEGALA-DLERALKTAPGSSSIWNSLGLVQGARGDNR 459
Query: 495 MARAAFETAVRKEPTAGDAVRNLALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAV 554
A AAF+ A+ +P + NLA+ + A+ ++ L + +A++A
Sbjct: 460 AAEAAFKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFD-VALVARGR 518
Query: 555 ANKRNDLVAVEKWLRQALERDPANMEAASNLASLLTSTSRPQAAIIVAQDAL----RISP 610
+ +N +K + L AN A SN LL + + I A AL R+ P
Sbjct: 519 YHMQNG--EADKAVEDLLAGSTAN-PAYSNAQLLLAAAHYEKGDRIPAAQALDNADRLDP 575
Query: 611 DTPAVMEALGKAQLLIGDYTAAADVLRRAVAIK 643
+ P V A + + I Y A A + A++
Sbjct: 576 NDPVV--ATVRTAIAIDAYDADAAIRNAQEALR 606
Score = 51.2 bits (121), Expect = 4e-10
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 16/232 (6%)
Query: 456 KKDFDKAEALAGDTKRKYPDRAWGWTMDGMIQASRGDTAMA-------RAAFETAVRKEP 508
++D A A+ +++YPD D + A+R A+ R E A+ +P
Sbjct: 352 REDIPAAIAVIKKAEQQYPD-------DPTLPAARAQLALLLDDRDELRDGVERALSIDP 404
Query: 509 TAGDAVRNLALTALQ-SGDTEGARGVVEGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKW 567
A+ A D EGA +E L+T G S++ V R D A E
Sbjct: 405 DDPTALEARAHYRYHIDNDLEGALADLERALKTAPGSSSIWNSLGLVQGARGDNRAAEAA 464
Query: 568 LRQALERDPANMEAASNLASLLTSTSRPQAAIIVAQDALRISPDTPAVMEALGKAQLLIG 627
+QA+ DP + + +NLA R A AL + P + A G+ + G
Sbjct: 465 FKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFDVALVARGRYHMQNG 524
Query: 628 DY-TAAADVLRRAVAIKPSGLTYYLLATAYLNLNDPPRLKEALESVVKLQPD 678
+ A D+L + A LLA A+ D +AL++ +L P+
Sbjct: 525 EADKAVEDLLAGSTANPAYSNAQLLLAAAHYEKGDRIPAAQALDNADRLDPN 576
Score = 38.9 bits (89), Expect = 2e-06
Identities = 96/425 (22%), Positives = 150/425 (35%), Gaps = 43/425 (10%)
Query: 196 AAAAAPDDVDVLVAQADTALSANDPAAAEGLFSQAAAR-LPLNPLIRLSLAQAQIEAGKN 254
A+ AA + + A+ LS N A+ ++AA+R L + R L +A I N
Sbjct: 230 ASPAASRPAEEWLTLAEIYLSLNGRDKAQAALAEAASRGLTRSQAARADLVKALIAGSSN 289
Query: 255 ---------AEARQTLNTVLADIPAHPWALYLRGLT-AYRTNDMTAADKDLTAALALAKT 304
A A + L+ I A+ + RGL R + A +A A T
Sbjct: 290 RYEEAARLFARAERGLDPSRLTIAAYG-GYFARGLADPARVEEPPRNASGRYAGMARAWT 348
Query: 305 LRPAIFLAGVVKYNIGEYEQASRLLAGLTETEGK--SNKTADAVRAA-ALLKLGRDDESY 361
G E +A + + E + + T A RA ALL RD+
Sbjct: 349 A--------------GFREDIPAAIAVIKKAEQQYPDDPTLPAARAQLALLLDDRDELRD 394
Query: 362 RLLRPLAAGDGETADLYAMAA----VAAQGAAAMADSEGYYQKAVVLRPDDPALLTNLGI 417
+ R L+ + L A A + A+AD E +A+ P ++ +LG+
Sbjct: 395 GVERALSIDPDDPTALEARAHYRYHIDNDLEGALADLE----RALKTAPGSSSIWNSLGL 450
Query: 418 VKLARGDTTAGEDTLNRAAELEGDDKKALLLLFSSLLQKKDFDKAEALAGDTKRKYPDRA 477
V+ ARGD A E +A L+ D + L + + +A+ P
Sbjct: 451 VQGARGDNRAAEAAFKQAIALDPLDPVSHANLAIQYMDEMRMAEAKREIDAALSVDPSFD 510
Query: 478 WGWTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVRNLALTALQSGDTEGARGVVEGY 537
G G+ A P +A LA + GD A ++
Sbjct: 511 VALVARGRYHMQNGEADKAVEDLLAGSTANPAYSNAQLLLAAAHYEKGDRIPAAQALDNA 570
Query: 538 LRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALER------DPANMEAASNLASLLTS 591
R + D +A + A+A D A + ++AL R D A + A S L
Sbjct: 571 DRLDPNDPVVATVRTAIAIDAYDADAAIRNAQEALRRTRAKGGDTAALGANQEQGSTLND 630
Query: 592 TSRPQ 596
R Q
Sbjct: 631 AFRLQ 635
Score = 30.0 bits (66), Expect = 0.001
Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 35/175 (20%)
Query: 50 DQKAALIHVSNALKAAPDNRDAKILMGEITLSGGDVWSGEKLLKEVRDGGAPAETWLRPL 109
D + AL + ALK AP + +W+ L++ R AE
Sbjct: 423 DLEGALADLERALKTAPGS--------------SSIWNSLGLVQGARGDNRAAEA----- 463
Query: 110 AKSLILQQKFDEALTLARSIPETELVGAVKTIEGLALFGKGQDGAARLALDKALDIDPAD 169
F +A+ L P + A++ ++ + + A+ +D AL +DP+
Sbjct: 464 --------AFKQAIALDPLDPVSHANLAIQYMDEMRM------AEAKREIDAALSVDPSF 509
Query: 170 KDALIGAAQIETMAGHQDAARALLARAAAAAP--DDVDVLVAQADTALSANDPAA 222
AL+ + G D A L + A P + +L+A A PAA
Sbjct: 510 DVALVARGRYHMQNGEADKAVEDLLAGSTANPAYSNAQLLLAAAHYEKGDRIPAA 564