Pairwise Alignments

Query, 933 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 5/284 (1%)

Query: 398 YQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGDDKKALLLLFSSLLQKK 457
           + KA+ L PD+   L  LG   +   +    E    R  ELE ++K AL  L    L ++
Sbjct: 47  FDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGEIHLSQE 106

Query: 458 DFDKAEALAGDTKRKYPDRAWG--WTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVR 515
           ++DK  AL    K    D + G  W   G+     G+   +  AF+ +     T      
Sbjct: 107 EYDK--ALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTGDYETLFLTWN 164

Query: 516 NLALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERD 575
           +L     Q+G+ + A G  +  L  +               K+       +   +A+ +D
Sbjct: 165 DLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQD 224

Query: 576 PANMEAASNLASLLTSTSRPQAAIIVAQDALRISPDTPAVMEALGKAQLLIGDYTAAADV 635
               +A  N       + +   AI   + AL ++   P        +   +G+Y  A   
Sbjct: 225 ECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLN 284

Query: 636 LRRAVAIKPSGLTYYL-LATAYLNLNDPPRLKEALESVVKLQPD 678
            ++A+ +      ++  L  +Y  LN+     ++ E  V+L P+
Sbjct: 285 YKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPE 328



 Score = 35.0 bits (79), Expect = 9e-06
 Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 1/190 (0%)

Query: 273 WALYLRGLTAYRTNDMTAADKDLTAALALAKTLRPAIFLAGVVKYNIGEYEQASRLLAGL 332
           ++L  +GL   +    T A +    A+   +    AI+  G+  Y   +Y  A       
Sbjct: 195 YSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKA 254

Query: 333 TETEGKSNKTADAVRAAALLKLGRDDESYRLLRPLAAGDGETADLYAMAAVAAQGAAAMA 392
            +    SN      +A +L +LG  +++    +     D +    ++   ++        
Sbjct: 255 LDLNN-SNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYN 313

Query: 393 DSEGYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGDDKKALLLLFSS 452
            S   Y+KAV L P+D    +NLG ++    +         ++ +L  ++K A   L +S
Sbjct: 314 SSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNS 373

Query: 453 LLQKKDFDKA 462
            L  K+++KA
Sbjct: 374 YLLLKNYEKA 383



 Score = 32.3 bits (72), Expect = 6e-05
 Identities = 57/331 (17%), Positives = 119/331 (35%), Gaps = 45/331 (13%)

Query: 394 SEGYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGD------------ 441
           +E Y+ + + L P++   L +LG + L++ +        N+  E++              
Sbjct: 77  AEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICL 136

Query: 442 ------------------DKKALLLLFSSL----LQKKDFDKA-----EALAGDTKRKYP 474
                             D + L L ++ L     Q  ++DKA     +AL  D   KY 
Sbjct: 137 KMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKY- 195

Query: 475 DRAWGWTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVRNLALTALQSGDTEGARGVV 534
                    G+    +    MA   F+ AV ++    DA+ N  ++  +S     A    
Sbjct: 196 ----SLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCF 251

Query: 535 EGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERDPANMEAASNLASLLTSTSR 594
           E  L  N  +       A   N+  +        ++A+E D  N    S L       + 
Sbjct: 252 EKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNE 311

Query: 595 PQAAIIVAQDALRISPDTPAVMEALGKAQLLIGDYTAAADVLRRAVAIKPSG-LTYYLLA 653
             ++I   + A+ ++P+       LG  Q    +Y  +     +++ +  +    +  L 
Sbjct: 312 YNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLG 371

Query: 654 TAYLNLNDPPRLKEALESVVKLQPDHVDSRV 684
            +YL L +  +     +  +++ P + + ++
Sbjct: 372 NSYLLLKNYEKALMCYDKAIEIDPLYNEPKI 402