Pairwise Alignments

Query, 927 a.a., Helicase c2 (NCBI) from Rhodospirillum rubrum S1H

Subject, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 99/350 (28%), Positives = 147/350 (42%), Gaps = 46/350 (13%)

Query: 216 LGQ---GAEARPQQADYASALCVAFQPRATPDWPTLVLAEAGTGVGKTLGYIAPASLWAE 272
           LGQ   G + R  Q D A A+  A   ++       ++ EAGTG GKT  Y+ PA L  +
Sbjct: 12  LGQAIPGFQPRQAQVDMAKAVASAIANQSQ------LVVEAGTGTGKTFAYLVPALLSGK 65

Query: 273 RNEGTVWISTYTRNLQRQLDGELDRLYPDPAEKMRKVVIRKGRENYLCLLNYEEAVGRLG 332
           +    V IST ++NLQ QL      L         +V + KGR NYLCL      +    
Sbjct: 66  K----VIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESH 121

Query: 333 ATPQEAVALGLMAR---WIKATRDGDMVGGDFPGWMVDILGRERSL--ALADRRGECVFS 387
               +   L  + +   W  +T+ GD+  G+      D L  +  +   +      C+  
Sbjct: 122 TPESDPTLLTQLVKVRSWASSTQSGDL--GE-----CDDLAEDSPIIPTITSTNDNCLGK 174

Query: 388 SCDHYDRCFIERAVRRARRARLVVANHALVLIQAAL---GGIDDDSRPTRYILDEGHHVF 444
            C  Y  CF+ +A RRA  A +VV NH L L   A+   G  +       +I DE H + 
Sbjct: 175 ECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLP 234

Query: 445 DAADSAFSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLEEALD 504
           D A   F   +S  +  +L +     E G+R+ A+ + R++  + D+    A DL   L 
Sbjct: 235 DIASQYFGQSVSSRQVQDLAK---DIELGYRTEAKDM-RQLQKVSDKLVQAAMDLRIVL- 289

Query: 505 GARALPGPGWAQRLAGGTGRGAIERF------------LATARTQVLARA 542
           G     G  W + L   T    +ER             LA  R+Q+L  A
Sbjct: 290 GEPGYRG-NWREVLKVPTVAREVERLNEALQFALDVLKLALGRSQLLDTA 338



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 668 FAATLAARAHGLVVTSATLRDGSGDGEADWLSAEARAGAPHLGTPAIRASVPSPFDYPAT 727
           F   +A +    + TSATL         D+     R G     TP+ + S+ SPFDY   
Sbjct: 384 FREQIALKEGAWIFTSATLAVNE-----DFSHFTERLGL----TPSAQFSLVSPFDYQQQ 434

Query: 728 TRVLVITDVKRDD----LDQVSAAYRELFRAAGGGGLGLFTAIGRLRAVHARIAPALDAL 783
             + V   +   +     +++      +     G    L T+   +R +  R     + L
Sbjct: 435 AVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFR---ERL 491

Query: 784 GLPLLAQHVDAMDISTLIEIFRAEEDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRP- 842
            LP+L Q   +    TL E F    +A L+ T A  +G+DV G +L  ++ D++P+  P 
Sbjct: 492 TLPVLMQGETSKQ-KTLAE-FMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPD 549

Query: 843 DILHKAR---RKAMGGSLYDD---RIARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSR-L 895
           D L KAR    +  GG  +       A + LKQ  GRL+R   D+G  ++ D+RL +R  
Sbjct: 550 DPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDY 609

Query: 896 GGAF 899
           GG F
Sbjct: 610 GGVF 613