Pairwise Alignments

Query, 347 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 71.2 bits (173), Expect = 4e-17
 Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 14/307 (4%)

Query: 40  VTVTAPREETVVERVGTTGTLVPREEIVVMAEVSNARILSLAAEVGDQVQKGQKLAVLDT 99
           VTV        V  +   G + P + + +  E +   I  +  E G QV K Q L +LD+
Sbjct: 44  VTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGV-IDQITFESGTQVAKDQPLVLLDS 102

Query: 100 ESLLLQVAQMEAEYTKARDEFVRVDSIKESGAVSKSLRIEKKTALDTMTAKLQEAKLAVR 159
                 +   EA    A+ ++ R   +   G++SK    E + +   ++A ++  K  + 
Sbjct: 103 AVERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIA 162

Query: 160 RTVITAPASGTVYERRAVVGGLSSQGDPLFRIAGKGEIEADLRVPEGVAGRVSVGQAVRL 219
           R  I AP +G +  R   +G     G  + R+     +     VP+    R+S+ Q V +
Sbjct: 163 RREIKAPFAGVIGIRNVFLGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDI 222

Query: 220 SLPGL-KAPLTGTVRLVAPRIDASDRSASVRVSVLTGQA-LMVGAFVHADIDLGEVTG-L 276
            +    +    G++  + P +        V+  +      L  G F  A+I L ++   +
Sbjct: 223 FVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQV 282

Query: 277 AVPTTAIQRDSEGAFMWTVKGDGGVARLAVTPLLERDGLTLVGDVSPDLRVVARAGGLVR 336
            +P TAI     G  ++ V  + G  R+       +  +  VG+ S  +  +      V+
Sbjct: 283 TLPQTAITYTLYGDNVYIVSEENGEKRV-------QQHVVKVGERSESIAHILEG---VK 332

Query: 337 AGDIVKT 343
            GD+V T
Sbjct: 333 PGDVVVT 339