Pairwise Alignments

Query, 1009 a.a., Acriflavin resistance protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

 Score =  413 bits (1062), Expect = e-119
 Identities = 290/1016 (28%), Positives = 492/1016 (48%), Gaps = 38/1016 (3%)

Query: 3    MPISTWAIRNPIPPIVLFLALTIAGLIAFTKLPVTSMPSVIVPVVSVTISQPGASPTEIE 62
            M +S  +++ P+  +VL + L + G+++FTKL V  MP +  PVVSV+    GAS T IE
Sbjct: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60

Query: 63   SQITRRVEGALAGLRGVKHITSTISEGTSLSTVEFHLETDFDRAMSDTRDAITNIRDQLP 122
            SQIT  +E  LAG+ G+  ITS    G S  TV F L  D +  +SD RDA+   +  LP
Sbjct: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120

Query: 123  RSILEPQVQRVEIDGGALLAFSVEAPEMRAEDLAWFIDDTVSRNLLAVPGVASVRRQGGV 182
                +PQV +    G A +  ++ + EM    L  +I+  +      + GV+SV   GG+
Sbjct: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180

Query: 183  VHEITVTLDPAKLAAFSVTAAEISRQLALTTIDLPGGRLIEGEREYSLRTLGGAQSASAL 242
               + V + P  +A   V  ++IS  L    ++ PGG++       S+RT  G QSA   
Sbjct: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240

Query: 243  RDIWIGLGS-GRGVRLGDIAEVTDGGAEARSITRLDGKPVVTFAVFRAKGASEITVGESV 301
              + +   S G  + L D+A+V  G     S  + DG   V+  +     A+ + V + V
Sbjct: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300

Query: 302  KRALEDSQAADPFVTYKEI-FSLVDFTQTSYQSTLYVFFEGAILTILTVFLFLRDRRATA 360
               ++  Q   P  T   I +    F + S        F    L IL +++F+   RAT 
Sbjct: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360

Query: 361  LAALTIPLSIIPTFLVLYFLGFSLNFVSLMAISLVTGVLVDDAIVEIENIHRHMAQAKGP 420
            + A+T+P+S+I  F+  Y+ GFS+N ++LMA+ L  G++VDDAIV +ENI  H+ + + P
Sbjct: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420

Query: 421  YDAAMIAADEIGLAVVATTAVICAVFMPVSFMGGAAGKFFIQFGVTVSVAAFFSLMVARL 480
              AA     E+G AV+ATT V+  VF+P+SFM G  G  F +F V +++A  FS ++A  
Sbjct: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480

Query: 481  LTPMIAAYGLKAPAHRDDKPGLWG-----------LRYRHLVVWTLDNRGKTLGIAALSV 529
            LTP++ +  LKA    + KPG +              YR +V   +  R     + A  +
Sbjct: 481  LTPVLGSKLLKA----NVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACI 536

Query: 530  VLSFGLVPYLSTGYLPYEDYAQSSMTIELPRGA-------TLEQTDAVALRVVDILKKHP 582
              S+GL+  +     P ED     +     RGA            D V  R++ +L +  
Sbjct: 537  GGSYGLMQLVPAQLTPSED---RGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGF 593

Query: 583  EVMYVLTSA--GGETGVNTATVEIKLLPLKARNVSQRGFESQVLSELTDLPDVRI----K 636
               + + S   GG  G  T  V + L     R V+ +   SQV   L  +PDVR+     
Sbjct: 594  LKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMP 653

Query: 637  FANSGGSKDISIALTGENAAALDAAARAIERDMRGIAGLIAVGSTAPSEQPEIVILPDFA 696
                G ++ +   L G + + L   A  +E +      +         + PE+V+  D  
Sbjct: 654  GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQ 713

Query: 697  KAAQLGVTVQALSDAVNIATIGDIDTNLAKLNHDGRQFAIRVRLASGPTTTLDTIGELRI 756
            +AA+LG++V+++SD + +   G   T   +    G ++ + +R           + ++ +
Sbjct: 714  RAAELGISVKSISDTLEVMLGGKKVTTFVE---RGEEYDVYLRGDENSFNNAADLSQIYM 770

Query: 757  PTSEGGSVPLSALAEIRFGSGPASIERYDRRRKIAVEANL-VDLSLGDALQLISDLPSMK 815
             T+ G  V L  +  I   +    +  Y++++ + + ANL    +LG AL  + D  + +
Sbjct: 771  RTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFL-DQKAQE 829

Query: 816  ALPKGIEALNTGDVEEMTDLFSRFLTAIGAGLMMVYAIQVLLYKDWIQPFTRMAALPLSI 875
             LP  I    +G+ ++  +  S         L++ Y +    ++ +I P   M  +P+ +
Sbjct: 830  ILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGV 889

Query: 876  GGAFLALVLTNTDLNMPAAIGILMLMGIADKNSILLVDYMVERIRQGVPRREAIIESCAV 935
             G FL L +    +N+ + IG++ML+G+  KN IL+V++  +   +GV   +AII++ A 
Sbjct: 890  FGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASAR 949

Query: 936  RARPIIMTSLAMLAGMVPIVLGIGLDTAFRAPMAVAVIGGLISSTALSLVFVPVLF 991
            R RPI+MT+   LAG +P+++  G     R  +   +  G+  +T ++L+ +P ++
Sbjct: 950  RLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005