Pairwise Alignments

Query, 620 a.a., DNA primase (NCBI) from Rhodospirillum rubrum S1H

Subject, 652 a.a., DNA primase (EC 2.7.7.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  326 bits (836), Expect = 2e-93
 Identities = 176/416 (42%), Positives = 257/416 (61%), Gaps = 5/416 (1%)

Query: 3   LPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTVNDEKGFFHCFGC 62
           +P +F+D+L  R  +  VV  R+++ + G+ +   CPFH EK+PSF+V+ +K F++CFGC
Sbjct: 5   IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKNYTACCPFHKEKTPSFSVSPDKQFYYCFGC 64

Query: 63  GAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETAEDRDRSRQAASHR--EIMEMAC 120
           GA G+ +GF M   N+ F +AVE L+  AG+E+PRE +  + + RQ        ++  A 
Sbjct: 65  GAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPLLTAAA 124

Query: 121 AFYQKALRL-PEGRGAMEYLRGRGLDDATLARFRLGFSPQG-GALKAALAREGVDEQAMV 178
            FY++AL+  P  + A++YL+GRGL       F LGF+P G   L   L+ + + ++AM+
Sbjct: 125 DFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQQRAMI 184

Query: 179 DLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQPKYLNSPDTPLFHKG 238
           D GL++ + +    +D FR RVMFPI D  GR++AFG R+LG+ +PKYLNSP+TP+FHKG
Sbjct: 185 DAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVLGDDKPKYLNSPETPVFHKG 244

Query: 239 HSLYNLGPAREAARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEALWRTIP 298
             LY L  AR+  R    IIV EGYMDVIALA+ GL  AVA LGTA +E  M+ L+R +P
Sbjct: 245 QELYGLYEARKNNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHMKRLFRVVP 304

Query: 299 EPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLREGGPVALR-QV 357
             + CFDGD AGR AA RA+E  LP +  GR  RF  LP G DPD L+R  G  A R ++
Sbjct: 305 NVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDPDTLVRSEGTDAFRARI 364

Query: 358 LDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIADRSLQGHYRQALRD 413
              A P ++  +++L+E     + E +A +       + K+   +L+   RQ L +
Sbjct: 365 NQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGANLRTLMRQRLSE 420