Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Pseudomonas stutzeri RCH2

 Score =  214 bits (546), Expect = 4e-60
 Identities = 104/254 (40%), Positives = 168/254 (66%), Gaps = 3/254 (1%)

Query: 429 EIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLI 488
           EI    LL   E        QKG+      +K MIE+NLRLV+ IA++Y NRGL  LDL+
Sbjct: 66  EIGFSPLLTPEEEVHFARLAQKGD---PAGRKRMIESNLRLVVKIARRYVNRGLSLLDLV 122

Query: 489 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 548
           +EGN+GL++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N  +R
Sbjct: 123 EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLR 182

Query: 549 TSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIED 608
            +R++  ++  EP+PEE+A  L+ P+ +V+++L + +   S++  +G + D  L D + D
Sbjct: 183 AARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVTSVDVSLGPDTDKTLLDTLTD 242

Query: 609 KNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 668
                P +  ++ +L  +  + L+ L+ ++  V+  RFG+  +   TLEEVGQ+  +TRE
Sbjct: 243 DRPTDPCELLLDDDLSNSIDQWLSDLSEKQREVVIRRFGLRGHEASTLEEVGQEIGLTRE 302

Query: 669 RIRQIEAKALRKLK 682
           R+RQI+ +ALR+L+
Sbjct: 303 RVRQIQVEALRRLR 316



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 113 DIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIE----AGREMMI 154
           D  R  D  ++YL E+G   LL+ E E+  A+  +    AGR+ MI
Sbjct: 52  DYNRALDATQLYLNEIGFSPLLTPEEEVHFARLAQKGDPAGRKRMI 97