Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (575), Expect = 2e-63
 Identities = 113/284 (39%), Positives = 183/284 (64%), Gaps = 1/284 (0%)

Query: 399 EDVAALPGKGWRDFTTRFADEIKDIRGSIAEIAERSLLPIPEFRRIVSTVQKGEREASRA 458
           E++ A+ G    D    F    K +  +   ++E    P+      V   ++  R    A
Sbjct: 33  EELVAVEGAS-EDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAA 91

Query: 459 KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 518
           +K MIE+NLRLV+ I+++Y+NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 92  RKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 151

Query: 519 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVR 578
           RQ I R++ +Q RTIR+P+H+++ +N  +RT+R++   +  EPTPEE+A +L  P++ V 
Sbjct: 152 RQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVT 211

Query: 579 KVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNLRETCTRVLASLTPRE 638
           K+L++ +   S++TPIG + D  L D + D +   P  +  + ++RE+    L  L P++
Sbjct: 212 KMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDELNPKQ 271

Query: 639 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682
           + VL  RFG+      TLEEVG++ ++TRER+RQI+ + LR+L+
Sbjct: 272 KEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315



 Score = 31.6 bits (70), Expect = 6e-05
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 72  DMGINVVEDEEEGEASAAPPAEAGEEEPGREVAATGNVSEDDIGRTDDPVRMYLREMGSV 131
           D  + V+E + E  +     A  G  E  RE         D   ++ D  +MYL E+G  
Sbjct: 17  DEALEVLETDAELTSDEELVAVEGASEDVRE-------EFDASAKSLDATQMYLSEIGFS 69

Query: 132 ELLSREGEIAIAKRI----EAGREMMI 154
            LL+ E E+  A+R     EA R+ MI
Sbjct: 70  PLLTAEEEVLYARRALRGDEAARKRMI 96