Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  545 bits (1403), Expect = e-159
 Identities = 337/673 (50%), Positives = 422/673 (62%), Gaps = 65/673 (9%)

Query: 31  VKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGINVVEDEEEGEASAAP 90
           +K+LV RGK++GY+TY E+N+ LP + V SEQ+ED + M++DMGI VVE   + +  A  
Sbjct: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68

Query: 91  PAEAGEEEPGREVAATGNVS-EDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 149
                 +E   E AA    S E +IGRT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 69  DDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128

Query: 150 REMMIGGICESPLTIRALLQWHDALVDGRMLLRDIID--LDATYGSGAGPDVVAEGLEDS 207
              +   I E P TI  +L+  D +    + L D+I   +D        P     G E S
Sbjct: 129 INQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGSELS 188

Query: 208 VVPLSPLALSPARALPKEADEAEEAVTPGRDDDSEDEDEGDDAKPADGAGDEEAAPSGED 267
              L              ADE +  V      + EDEDE +D       GD E++ S E+
Sbjct: 189 EADL--------------ADEDDAVV------EDEDEDEDED-------GDGESSDSEEE 221

Query: 268 EGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQDQRIAALQKGEEPGAALERK 327
            G           ++ EL     E F  +        K Q+ ++A  + G +   A E  
Sbjct: 222 VG-----------IDPEL---AREKFNELRG------KFQNLQLAVNEFGRDSHQASEAS 261

Query: 328 YDKLKLELV-GLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLR-LAERAKIRRDEFL 385
                 +LV  +  +  L   + + LVE L      + TQE  +++ + E AK+ +  F+
Sbjct: 262 ------DLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFI 315

Query: 386 DHYFGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRGSIAE---IAERSLLPIPEFR 442
             + G E +  W + V A      + +  +  ++ ++IR SI +   I + + L +   +
Sbjct: 316 ALFTGNESNEEWLDKVLASD----KPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIK 371

Query: 443 RIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 502
            I   +  GE +A RAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
Sbjct: 372 DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 431

Query: 503 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPT 562
           EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQML E+GREP 
Sbjct: 432 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL 491

Query: 563 PEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSN 622
           PEELAE++QMP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFIED     PLD+A  ++
Sbjct: 492 PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS 551

Query: 623 LRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682
           L+     VLA LTPRE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+
Sbjct: 552 LKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611

Query: 683 HPSRSRKLRSFLD 695
           HPSRS  LRSFLD
Sbjct: 612 HPSRSEVLRSFLD 624