Pairwise Alignments

Query, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  542 bits (1396), Expect = e-158
 Identities = 326/672 (48%), Positives = 415/672 (61%), Gaps = 75/672 (11%)

Query: 31  VKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGINVVEDEEEGEASAAP 90
           +K L+ +GK++GY+TY E+N+ LP D V S+QIED + M++DMGI V E   + +     
Sbjct: 12  LKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYEQAPDAD-EIMM 70

Query: 91  PAEAGEEEPGREVAATGNVSEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR 150
             ++ +E+   E AA     E ++GRT DPVRMY+REMG+VELL+REGEI IAKRIE G 
Sbjct: 71  SEDSTDEDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEIVIAKRIEEGI 130

Query: 151 EMMIGGICESPLTIRALLQWHDALVDGRMLLRDIIDLDATYGSGAGPDVVAEGLEDSVVP 210
             +   + E P  I  +L+ +D      + L DII                 G  D    
Sbjct: 131 NTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDII----------------SGFVD---- 170

Query: 211 LSPLALSPARALPKEADEAEEAVTPG---RDDDSEDE-DEGDDAKPADGAGDEEAAPSGE 266
                       P   D A  A   G    DDD +DE DEGDD    D  GDEE +P G 
Sbjct: 171 ------------PNAEDMAPTATHIGSELSDDDLDDEDDEGDD---EDDDGDEEDSPKGP 215

Query: 267 DEGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQDQRIAALQ-KGEEPGAALE 325
           D  +  E                          + +L++A ++ +  ++ KG E   A  
Sbjct: 216 DPEEARER-------------------------FTQLREAHEKALKVIELKGREHPEATA 250

Query: 326 RKYDKLKLELVGLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLRL-AERAKIRRDEF 384
             +D     +  + ++  L   + ++LV+ +  +   +  QE  +++L  E+AK+ +  F
Sbjct: 251 ALFD-----IGEIFKEFRLVPKQFDRLVKNMREMMDKVRIQERLIMKLCVEQAKMPKKNF 305

Query: 385 LDHYFGREMDPSW-REDVAALPGKGWRDFTTRFADEIKDIRGSIAEIAERSLLPIPEFRR 443
           +  Y   E    W  E++AA   K + +     A++++  R  +  I   + L I   + 
Sbjct: 306 VKVYTSNESSIEWFNEEIAA--KKPYAEGLEMVAEDVQRCRAKLDAIENETGLAIAAIKD 363

Query: 444 IVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 503
           I   +  GE +A RAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
Sbjct: 364 INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE 423

Query: 504 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTP 563
           YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQML E+GREP+P
Sbjct: 424 YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSP 483

Query: 564 EELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSNL 623
           EELAE++ MP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFIED     PLD+A   +L
Sbjct: 484 EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGESL 543

Query: 624 RETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH 683
           +     VLA LT RE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+H
Sbjct: 544 KNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH 603

Query: 684 PSRSRKLRSFLD 695
           PSRS  L+SFLD
Sbjct: 604 PSRSEILKSFLD 615