Pairwise Alignments

Query, 784 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 388 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 43.1 bits (100), Expect = 3e-08
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 38  ALEACRNALALAPDHPDLLAAQGAIALAENDASQARAAFDHLAATTPADARGWHGLGRVH 97
           A ++   AL++ P+  +++ +   +    N     + + + L   + +D +    LG  +
Sbjct: 65  AQDSYEKALSIRPNDLEIIKSYTMLL---NSLELFKESVEILKNVSESDDKIIEILGDAY 121

Query: 98  LALGEPADALLALDRATERAQAPLAGLAHDRALALRQLGRFDEALATLERALEHSPGDCA 157
           L  G+  +A+L  +   ER       LA  +  AL  L +FDEAL   E+ L+ SP D  
Sbjct: 122 LKTGKFNEAILQYNNILERKPRYKEILAK-KGTALVGLKKFDEALEIYEKVLKISPYDTE 180

Query: 158 LLTQKARVLERARRPRDAAEVAGQVLARHPDDATAQAVLADALLTLGRPGEAL 210
           +           ++   A +     L  H  D        DAL  LG+  EAL
Sbjct: 181 VWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRKLGKTNEAL 233



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 44  NALALAPDHPDLLAAQGAIALAENDASQARAAFDHLAATTPADARGWHGLGRVHLALGEP 103
           N L   P + ++LA +G   +      +A   ++ +   +P D   W  +G     + + 
Sbjct: 136 NILERKPRYKEILAKKGTALVGLKKFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKY 195

Query: 104 ADALLALDRATERAQAPLAGLAHDRALALRQLGRFDEALATLERALE 150
             A+   D      +    G+   +  ALR+LG+ +EAL    + LE
Sbjct: 196 EKAIQFYDMYLNEHKGDF-GVTLSKGDALRKLGKTNEALDLYTKVLE 241



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 131 ALRQLGRFDEALATLERALEHSPGDCALLTQKARVLERARRPRDAAEVAGQVLARHPDDA 190
           A   LG+   A  + E+AL   P D  ++     +L      +++ E+   V     DD 
Sbjct: 55  AYHMLGKSKLAQDSYEKALSIRPNDLEIIKSYTMLLNSLELFKESVEILKNV--SESDDK 112

Query: 191 TAQAVLADALLTLGRPGEALAPARALLDR 219
             + +L DA L  G+  EA+     +L+R
Sbjct: 113 IIE-ILGDAYLKTGKFNEAILQYNNILER 140