Pairwise Alignments
Query, 585 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H
Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942
Score = 209 bits (532), Expect = 4e-58
Identities = 157/443 (35%), Positives = 212/443 (47%), Gaps = 33/443 (7%)
Query: 161 EAAVARAPGAIDPRADLAEALRR-------LDRPGDAAQLLRAVLADAPGRADLADALAG 213
EAA+A+ + D A AL D+ LLR +A P + L
Sbjct: 24 EAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIALDPTDPTHFNNLGN 83
Query: 214 ALLAAGAVDESVAVLRASLDKAPTHGAGWVNLAAALIETGALDEATAAAD--RALALDPD 271
L G + E++ L +L PTH A N A L + G D ATA D + L DPD
Sbjct: 84 LLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLG--DPATALQDYQQLLEADPD 141
Query: 272 DADAKVNRAFARCLADDYEQGFADYAHRWRTAAFQRPYPPVTA----PPWAGEPLGEGTL 327
+ + + N A A D++ G Y R + + +P + A P W G+ L + TL
Sbjct: 142 NPEIRYNSAHAALAIGDWDFGLPAYEARCQQL---QHFPEIEASLKLPRWQGQDLDQQTL 198
Query: 328 LVRGEQGLGDQIMAARFLPWLSKRPDRPRRIVFECHPCLHRLLAEGLEAGIDLLAMGRPP 387
LV GEQG GD++M AR++P L +R + R IV++ P L RL + + +LA G
Sbjct: 199 LVWGEQGFGDRLMGARWIPLLRQRYPQAR-IVWQTSPSLVRLFQTLADDRLMVLAEGAEL 257
Query: 388 PPVAAWIGALDLARMAGVTAGVMPVDVPYLKARPPVPPLAPPLPPGGRGRLGLVWAGKTR 447
P + L L + +P PY P LP R RLGLVW+
Sbjct: 258 PVCDWQVPLLSLMLIFQSDRNRLPWHGPYF-----FPHKGDFLPASDRPRLGLVWSAGRN 312
Query: 448 PR-------DRSCPLEPLAGLCVDQGWTVHALQLGPRRADLAGLPAGLGVIDEGDRLGDM 500
P ++SCPL L + GW V +LQ+ R DL L L +D G +GD
Sbjct: 313 PAQSAEFAANKSCPLALLWSVLSVSGWDVVSLQVDEARQDLQTLSDPL--LDLGSEIGDF 370
Query: 501 AATASVMAGLDLVVAVDTAVAHLAGALGLPCALLLLATPDWRWGQKASRTVWYPSLRLFR 560
T +A LDL++ VDTA+AHL G +GLP +LL A PDWRW + T WYPSLRLFR
Sbjct: 371 QDTVDRLAHLDLLITVDTAIAHLGGMIGLPTWVLLPAVPDWRWELSGATTPWYPSLRLFR 430
Query: 561 QPHPGDWDGAFDAVRRAFAQGWP 583
QP PGDW GA ++ A A+ P
Sbjct: 431 QPSPGDWSGAIAELQTALAEFQP 453
Score = 168 bits (425), Expect = 1e-45
Identities = 135/444 (30%), Positives = 209/444 (47%), Gaps = 40/444 (9%)
Query: 159 LLEAAVARAPGAIDPRADLAEALRRLDRPGDAAQLLRAVLADAPGRADL------ADALA 212
L+ AVA AP L +L++ AAQ L AP +A+ +
Sbjct: 488 LIRQAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYD 547
Query: 213 GALLAA-GAVDESVAVLRASLDKAPTHGAGWVNLAAALIETGALDEATAAADRALALDPD 271
L AA ++++++A+ A+ D + G L G E+ A D A A+ P+
Sbjct: 548 NQLTAALNSLNQAIALQGATADHLISRGVLHYRL-------GQFPESCADYDAAAAIAPE 600
Query: 272 DADAKVNRAFARCLADDYEQGFADYAHRWRTAAFQRPYP-PVTAPPWAGEPLGEGTLLVR 330
+ NR F + ++ QG+ D R+ + P+ AP W GEPLG+ TLL+
Sbjct: 601 SPLLRCNRGFLQLHWGNWLQGWPDLEVRFDFQSDLDPFQYRQLAPAWQGEPLGQQTLLIW 660
Query: 331 GEQGLGDQIMAARFLPWLSKRPDRPR-RIVFECHPCLHRLLAEGLEAGIDLLAMGRPPPP 389
GEQGLGD ++ R+LP L R P+ +++F P L RL+ + + + + + P P
Sbjct: 661 GEQGLGDHLLFCRWLPEL--RLQHPQAQLIFVTDPLLERLMQQLADDRLQICCLDEPVPA 718
Query: 390 VAAWIGALDLARMAGVTAGVMPVDVPYLKARPPVPPLAPPLPPGGRGRLGLVWAGKTRP- 448
+ + L +A T +P Y ++ PPL ++G VWA R
Sbjct: 719 CDRQVALMSLPAIAQTTPATVPWRGAYFQSS------MPPLRCAETLQVGFVWASGKRSS 772
Query: 449 -------RDRSCPL-EPLAGLCVDQGWTVHALQLGPRRADLAGLPAGLG----VIDEGDR 496
R++SCPL E L L ++ Q+G AD+A L L + D ++
Sbjct: 773 PETARLYREKSCPLNELLPALLAVPAVDYYSFQVG---ADVAELQPWLEQSDRLFDLSEQ 829
Query: 497 LGDMAATASVMAGLDLVVAVDTAVAHLAGALGLPCALLLLATPDWRWGQKASRTVWYPSL 556
L D TA +A +D++++VDTAVA+LAG + LP LL +WRWG T WYPS+
Sbjct: 830 LQDFQDTADWLAEMDVLISVDTAVANLAGMMALPVWTLLPEPANWRWGLTGHTTPWYPSM 889
Query: 557 RLFRQPHPGDWDGAFDAVRRAFAQ 580
RL+RQ G+W GA +++ Q
Sbjct: 890 RLYRQTQRGNWSGAIAQIQQDLQQ 913
Score = 48.1 bits (113), Expect = 2e-09
Identities = 47/156 (30%), Positives = 62/156 (39%), Gaps = 2/156 (1%)
Query: 8 ALKLLEAGLVESAAIPVAQALERDPDDPRAHHLAGLIARRGGDGALALAAFTRGLAVAAD 67
A+ +AG E+A + + L PD A L GL + R +A+
Sbjct: 14 AIAAYQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIALDPT 73
Query: 68 DAPLRIERAGLLLDL-GRAEEALADLAVALALAPDHQAVLSTQGRALIDLGRPGEALAPL 126
D P G LL G EAL L ALA+ P H A + L LG P AL
Sbjct: 74 D-PTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQDY 132
Query: 127 RRARALAPDDVAPAHNLGRALLALDRPDEALPLLEA 162
++ PD+ +N A LA+ D LP EA
Sbjct: 133 QQLLEADPDNPEIRYNSAHAALAIGDWDFGLPAYEA 168