Pairwise Alignments

Query, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  242 bits (617), Expect = 1e-67
 Identities = 187/550 (34%), Positives = 267/550 (48%), Gaps = 25/550 (4%)

Query: 252  LQSVLESTSDGIITVDDKGSIESINGAAERVLGLTRDEAVGRPLGDLIPLDRLAEDGGEE 311
            L     +TS+G++ +D    +   N AA+ +LG++ D+ + R    L+     +ED  +E
Sbjct: 935  LAQAFANTSEGVLILDADERVRVSNKAAQSILGMSADDLIDRYFAQLV---HSSEDRSDE 991

Query: 312  -GALSRRLLALRGREIDLPARRADGAAFHLSLKLSDFM--LGERRYFNALIADVTDRKAM 368
               L  + +   G       + A+G    + L LS      G   ++ A+ +D+T+RK  
Sbjct: 992  INILLEQGITWTGEH---EFQCAEGLICPVWLNLSTMKDDRGNISHYVAVFSDITERKQT 1048

Query: 369  IDRLTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGH 428
               L  LA  D LTGL NR  F   L K + RA +     +A+I +DLDRFK VNDS GH
Sbjct: 1049 EADLRRLANYDVLTGLPNRSLFAARLAKCIHRAEQTEDK-LALIFLDLDRFKNVNDSYGH 1107

Query: 429  QAGDCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLHG-VNREGALHVAEALRLCLADYA 487
              GD LL E A  L   + E   L R GGDEF +L+   V+ +   H+ EAL +   +  
Sbjct: 1108 SMGDALLVEAASRLQSCVSENHTLCRFGGDEFVILMRDMVDIDEVNHLCEAL-IRQIEKP 1166

Query: 488  FSYDGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFE-EGDLEVR 546
            F   G+   I  S+GV+ W  D   PE L+  AD AM  AK  GR     F  E + E  
Sbjct: 1167 FELYGREFFISTSIGVSLWPDDAKQPEVLIKNADQAMYHAKEEGRGNFQYFSAERNAEAL 1226

Query: 547  ARVVADAGYSKLIDRGLRNNLFRPVFQPIIDVTSG-AVVGHETLARLHDPAAIGLTMDVL 605
              +  +A   K +DR      F   FQP ID+     VVG E L R H P    +  D+ 
Sbjct: 1227 YHLKLEAELRKAMDR----QEFELYFQPQIDILKDDKVVGMEALLRWHHPKEGYIRPDIF 1282

Query: 606  IPVAERFGLAVEIDRQIILAVTEALAEDAGWLEGGF----LSFNLSAQSVGDGRIFSAVR 661
            I VAE  GL +EIDR +I    +A  + A W E       LS N+SA           V+
Sbjct: 1283 IRVAESCGLIIEIDRWVI---KQACLQGAKWAEHFGDELKLSVNVSAVHFRQPDFIQDVQ 1339

Query: 662  RLIATRRLPPQALIFEITETAAIASLAAARTFLKALTDLGCKTALDDFGSGYSSFTYLRE 721
            + +    +P + L  EITE   +  L  A+  LKAL ++G + A+DDFG+GYSS  YLR 
Sbjct: 1340 QALKESGMPAKMLGLEITEGVLMKELHVAKDHLKALREIGIEVAIDDFGTGYSSLAYLRS 1399

Query: 722  LPVDFLKIDGRYVRDIHHDPVKAAMVQAINTVAHAMGMRTIAECVEEASGLEVLRQSGVD 781
              V  LKID  ++ DI  +    A+  +I  +A  + ++ +AE VE    LE +   G  
Sbjct: 1400 FDVSTLKIDRSFLIDIATNEADQAIASSIIELARNLKLKVVAEGVETQEQLEQVFSRGCY 1459

Query: 782  CAQGFLFGRP 791
              QG+ F +P
Sbjct: 1460 IIQGYYFAKP 1469