Pairwise Alignments

Query, 820 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  237 bits (604), Expect = 3e-66
 Identities = 179/553 (32%), Positives = 272/553 (49%), Gaps = 27/553 (4%)

Query: 254 SVLESTSDGIITVDDKGSIESINGAAERVLGLTRDEAVGRPLGDLIPLDRLAEDGGEEGA 313
           SV  ++S+ +   D KG I +IN A   + G +++EA+ + +  L           E  +
Sbjct: 460 SVYNNSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRSQYDEMNS 519

Query: 314 LSRRLLALRGREIDLPARRADGAAFHLSLKLSDFMLGERRYFN--ALIADVTDRKAMIDR 371
             R     +G   +L  +   G  + + L ++       + +   AL +D+T++K     
Sbjct: 520 AIRDTGYWQG---ELWIKNKSGEEYMVWLTINTIFDQHGQVYRRVALFSDITEKKEAEHI 576

Query: 372 LTFLAQRDPLTGLINRRSFFDDLEKAVARAGRFPAAGVAVISIDLDRFKYVNDSLGHQAG 431
           +   A  DPLTGL NRR   + L   + R  R   +  A++ +DLD FK VND+LGH  G
Sbjct: 577 IWKQANYDPLTGLPNRRMLLEYLNTEILRIDR-NHSHFALMFLDLDFFKEVNDTLGHDMG 635

Query: 432 DCLLKEVAEVLFGRLRETDLLARLGGDEFAVLLHGVNR-EGALHVAEALRLCLADYAFSY 490
           D LL+E A+ L G +RE+D++ARLGGDEF V+L G++   G   VA+++   +A+  +S 
Sbjct: 636 DLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAE-PYSL 694

Query: 491 DGKSVEIGCSLGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFEEGDLEVRARVV 550
             ++  I  S+G+  +  D    E LL  AD AM  AK  GRNR H F     E      
Sbjct: 695 GDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEY----- 749

Query: 551 ADAGYSKLIDRGLRNNLFRPVF----QPIIDVTSGAVVGHETLARLHDPAAIGLTMDVLI 606
             A Y   + + LRN + R  F    QPI+D+    V   E L R   P    ++    I
Sbjct: 750 --ARYRMALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFI 807

Query: 607 PVAERFGLAVEIDRQIILAVTEALAEDAGWLEGGFLSFNLSA-----QSVGDGRIFSAVR 661
           PVAE  GL  EI   +     +A  + A W     +   +S      Q   +G  FS   
Sbjct: 808 PVAEETGLINEIGNWVF---EKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWL 864

Query: 662 RLIATRRLPPQALIFEITETAAIASLAAARTFLKALTDLGCKTALDDFGSGYSSFTYLRE 721
            L+    L   A+  EITE   + +       L A  D G + +LDDFG+GYSS  YL++
Sbjct: 865 ALLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKK 924

Query: 722 LPVDFLKIDGRYVRDIHHDPVKAAMVQAINTVAHAMGMRTIAECVEEASGLEVLRQSGVD 781
             +D+LKID  + R++  D    A+ +AI  +AH +G++ IAE VE     ++L  +G D
Sbjct: 925 FDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCD 984

Query: 782 CAQGFLFGRPAPL 794
            AQG+L+ +P  L
Sbjct: 985 FAQGYLYSKPVSL 997