Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 659 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Pseudomonas stutzeri RCH2

 Score =  454 bits (1168), Expect = e-132
 Identities = 270/634 (42%), Positives = 374/634 (58%), Gaps = 31/634 (4%)

Query: 16  AYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDLA 75
           +YTA +IEVL GL+PVR+RPGMY   TD    +HL  E++DN++DEA+AG+A+ + + L 
Sbjct: 33  SYTAEAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 89

Query: 76  VDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVV 135
            D S+ V D+GRG+P+D HP       +E+ILT LH+GGKF    Y+ SGGLHGVGISVV
Sbjct: 90  QDNSLEVIDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 148

Query: 136 NALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRR-GTQVRFHPDAEIFGPRAR 194
           NALS  + V V RD + +   F  G     L+ IG    R  GT VRF  D + F    +
Sbjct: 149 NALSTRVEVTVKRDGSEYRMSFADGFKATDLEVIGSVGKRNTGTSVRFWADPKYFDS-PK 207

Query: 195 FKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALANR 254
           F  + L  + ++KA L  G+ + +        +D G   +  +H+ +GL  YL  ++++ 
Sbjct: 208 FSISRLKHVLKAKAVLCPGLSVSF--------EDKGSGEKVEWHYEDGLRSYLVDSVSDY 259

Query: 255 PLVGGRTFAGTANLPDDMGTVEWALCW-PEDDEPFFNSYVNTIPTPEGGTHEAGLRNALT 313
             +    F GT  L  +   V+WAL W PE  E    SYVN IPT +GGTH  GLR  L 
Sbjct: 260 LRLPDEPFVGT--LAGNTEAVDWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLL 317

Query: 314 RGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQ 373
             +R F E          L  ED+    A + SM +++PQF GQTKE+L+S+EA   V  
Sbjct: 318 DAMREFCEFRNLLPRGLKLAPEDIWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSG 377

Query: 374 ALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDCTR 433
            ++D F  WL   P+    L   A+  A  RL  +  K+  RK  T+   LPGKL+DC  
Sbjct: 378 VVKDAFSLWLNAHPELGMQLAELAINNAGRRL--KAGKKVERKKITQGPALPGKLADCAG 435

Query: 434 STRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAE 493
                 ELFLVEGDSAGGSAKQARD++ QA++PLRGKILN       ++  +QE+ D+A 
Sbjct: 436 QDPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 495

Query: 494 ALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMPP 553
           A+G    GA DL  LRY K+ I+ DAD DG HIA+LL   F +    LV AGH+Y+AMPP
Sbjct: 496 AIGVDP-GAADLGQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPP 554

Query: 554 LYRLTQGGTSVYARDDAHKDQLMKTVF--KTKGKVEISRFKGLGEMPPAQLRETTMAYAT 611
           LYR+  G    YA D+A +D +++ +   K +GK +++RFKGLGEM P QLRETTM   T
Sbjct: 555 LYRIDLGKDIFYALDEAERDGILERLVAEKRRGKPQVTRFKGLGEMNPPQLRETTMDPNT 614

Query: 612 RQLLRVTVPGGKTEEDREDARETAKLVEELMGRK 645
           R+L+++T+         +D   T ++++ L+ +K
Sbjct: 615 RRLVQLTL---------DDFEGTREIMDMLLAKK 639