Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  461 bits (1186), Expect = e-134
 Identities = 285/650 (43%), Positives = 374/650 (57%), Gaps = 30/650 (4%)

Query: 15  DAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDL 74
           + Y A +IEVL GLEPVRRRPGMY   TD    +HL  E++DN++DEA+AGYA  I + L
Sbjct: 3   EQYNAGAIEVLNGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGYASKIQVIL 59

Query: 75  AVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISV 134
             D S+ V D+GRG+P+D HP     S +E+IL  LH+GGKF    Y+ SGGLHGVGISV
Sbjct: 60  HADQSLEVIDDGRGMPVDIHPE-EKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISV 118

Query: 135 VNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRR-GTQVRFHPDAEIFGPRA 193
           VNALS  + V V RD  ++   F  G  +  L   G    R  GT V F PD + F    
Sbjct: 119 VNALSKRVEVAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDS-P 177

Query: 194 RFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALAN 253
            F  + L    R+KA L  G+        E++  D     E  + + +GL DYL   +  
Sbjct: 178 NFSVSRLINNLRAKAVLCPGL--------EIIFTDKVNNNEHRWLYEDGLKDYLAEGVKG 229

Query: 254 RPLVGGRTFAGTANLPDDMGTVEWALCW-PEDDEPFFNSYVNTIPTPEGGTHEAGLRNAL 312
             L+    F G      +  T  WA+ W PE  E    SYVN IPT +GGTH  GLR  L
Sbjct: 230 YTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGL 287

Query: 313 TRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVE 372
              +R F E          LT EDV    A + S+ ++DPQF GQTKE+L+S+++   V 
Sbjct: 288 LDAMREFCEFRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVS 347

Query: 373 QALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDCT 432
             ++D F  WL   P  A  L    +  A  R+R   +K+  RK       LPGKL+DCT
Sbjct: 348 GVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRA--SKKVVRKKIASGPALPGKLTDCT 405

Query: 433 RSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLA 492
                 TELFLVEGDSAGGSAKQARDR+ QAV+PLRGKILN    S D++  +QE+ D++
Sbjct: 406 VQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDIS 465

Query: 493 EALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMP 552
            ALG     + +LE LRY KV I+ DAD DG HIA+LL   F R   ALV AGH+Y+AMP
Sbjct: 466 VALGIDP-DSDNLEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMP 524

Query: 553 PLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEISRFKGLGEMPPAQLRETTMAYATR 612
           PLYR+  G    YA DD  K+ +++ + + K KV + RFKGLGEM P QLRETTM   TR
Sbjct: 525 PLYRIDCGKEVFYALDDQEKEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTR 584

Query: 613 QLLRVTVPGGKTEEDREDARETAKLVEELMGRK-PELRFRFIQENARFAE 661
           +L+++T+         +DA  T ++++ L+G+K  + R  ++Q N   AE
Sbjct: 585 RLVQLTI---------DDAEATDEMMDMLLGKKRADDRRAWLQRNGDMAE 625