Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas syringae pv. syringae B728a

 Score =  446 bits (1146), Expect = e-129
 Identities = 266/636 (41%), Positives = 371/636 (58%), Gaps = 31/636 (4%)

Query: 14  ADAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDID 73
           A +Y A +IEVL GL+PVR+RPGMY   TD    +HL  E++DN++DEA+AG+A+ + + 
Sbjct: 6   ASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHARSVQVI 62

Query: 74  LAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGIS 133
           L  D S+ V D+GRG+P+D HP     S +E+ILT LH+GGKF    Y+ SGGLHGVGIS
Sbjct: 63  LHADNSLEVSDDGRGMPVDIHPE-EGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 121

Query: 134 VVNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRR-GTQVRFHPDAEIFGPR 192
           VVNALS  +RV V RD   +   F  G     L  +G    R  GT V F PD + F   
Sbjct: 122 VVNALSTQVRVRVKRDGNEYEMTFADGYKATELAVVGTVGKRNTGTSVYFAPDPKYFDT- 180

Query: 193 ARFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALA 252
            +F  + L  + ++KA L  G+ + +        +D     +  +H+ +GL  YL  ++ 
Sbjct: 181 PKFSVSRLKHVLKAKAVLCPGLLVSF--------EDKSSGEKVEWHYEDGLRSYLQDSVT 232

Query: 253 NRPLVGGRTFAGTANLPDDMGTVEWALCW-PEDDEPFFNSYVNTIPTPEGGTHEAGLRNA 311
               +    F G+     +   V+WAL W PE  +    SYVN IPT +GGTH  GLR  
Sbjct: 233 EFLRLPDEPFCGS--FTGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQG 290

Query: 312 LTRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLV 371
           L   +R F E          L  EDV    A + SM +++PQF GQTKE+L+S+EA   V
Sbjct: 291 LLDAMREFCEFRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFV 350

Query: 372 EQALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGKLSDC 431
              ++D F  WL    +    L   A+  A  RL+   +K+  RK  T+   LPGKL+DC
Sbjct: 351 SGVVKDAFSLWLNTHSELGLQLADLAINNAGRRLKA--SKKVERKRITQGPALPGKLADC 408

Query: 432 TRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDL 491
                  +ELFLVEGDSAGGSAKQARD++ QA+LPLRGKILN       ++  +QE+ ++
Sbjct: 409 AGQDPARSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNI 468

Query: 492 AEALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAM 551
           A A+G    GA D+  LRY K+ I+ DAD DG HIA+LL   F +    LV AGH+Y+AM
Sbjct: 469 AVAIGVDP-GAADISQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVDAGHVYVAM 527

Query: 552 PPLYRLTQGGTSVYARDDAHKDQLMKTVF--KTKGKVEISRFKGLGEMPPAQLRETTMAY 609
           PPLYR+  G    YA D+A +D ++  +   K +GK +++RFKGLGEM P QLRETTM  
Sbjct: 528 PPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDP 587

Query: 610 ATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRK 645
            TR+L+++T+         +D   T+++++ L+ +K
Sbjct: 588 NTRRLVQLTL---------DDFAATSEMMDMLLAKK 614