Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  426 bits (1095), Expect = e-123
 Identities = 243/568 (42%), Positives = 349/568 (61%), Gaps = 16/568 (2%)

Query: 15  DAYTARSIEVLEGLEPVRRRPGMYIGGTDE-RALHHLVAEILDNAMDEAVAGYAQVIDID 73
           ++Y + SI+VL+GL+ VR+RPGMYIG TD+   LHH+V E++DN++DEA+AG+   I I 
Sbjct: 4   NSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITIT 63

Query: 74  LAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGIS 133
           + VDGSV V+D+GRGIP+  H      SA EVI+T LH+GGKF  ++YKVSGGLHGVG+S
Sbjct: 64  IHVDGSVSVKDDGRGIPVSIHEE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 122

Query: 134 VVNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRA 193
           VVNALS  L++ + RD  +  Q +  G P  P+++IG A  + GT++RF P  + F    
Sbjct: 123 VVNALSKKLQLTIRRDGKVHEQFYTHGVPDAPIKEIGDA-TKTGTEIRFWPSEQTFS-NV 180

Query: 194 RFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALAN 253
            F   +L +  R  ++L  GV IR       L D+     E  F +  G+  ++ +   N
Sbjct: 181 EFHFEILAKRVRELSFLNSGVGIR-------LVDERDNKNE-FFKYEGGISAFVDYLNRN 232

Query: 254 RPLVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALT 313
           +  V    F       D + TVE A+ W +  +     + N IP  +GGTH AG R+ALT
Sbjct: 233 KTPVNKDVFHFMQERDDGI-TVEVAMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALT 291

Query: 314 RGLRSFAEMSG-NKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVE 372
           R L ++ E  G NKKG    T +D   G   + S+ + DP+F  QTK+KL S E    VE
Sbjct: 292 RNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVE 351

Query: 373 QALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKE-TSRKTATKKLRLPGKLSDC 431
           Q + +  + +L   P  A L++   ++ A  R   R+A+E T RK A     LPGKL+DC
Sbjct: 352 QTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADC 411

Query: 432 TRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDL 491
                  +E+++VEGDSAGGSAKQ R+R+ QA+LPL+GKILNV  A  DK+  +QE++ L
Sbjct: 412 QEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATL 471

Query: 492 AEALGCGT-RGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLA 550
             ALGCG  R  ++ +  RY  ++IMTDADVDG+HI +LL+TFFFR+MP L+  G++Y+A
Sbjct: 472 ITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIA 531

Query: 551 MPPLYRLTQGGTSVYARDDAHKDQLMKT 578
            PPL+++ +G    Y +D++   Q + T
Sbjct: 532 QPPLFKVKKGKQEQYLKDESALTQYLTT 559



 Score = 56.2 bits (134), Expect = 6e-12
 Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 9/88 (10%)

Query: 578 TVFKTKGKVEISRFKGLGEMPPAQLRETTMAYATRQLLRVTVPGGKTEEDREDARETAKL 637
           T+ + K  + I R+KGLGEM P QL ETTM   +R++L+VT+         +DA    +L
Sbjct: 727 TISEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTI---------DDAVGADQL 777

Query: 638 VEELMGRKPELRFRFIQENARFAENLDI 665
              LMG + E R  FI+ NA    NLD+
Sbjct: 778 FTCLMGDQVEPRREFIEANALNVANLDV 805