Pairwise Alignments

Query, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

Subject, 798 a.a., DNA gyrase, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  410 bits (1055), Expect = e-119
 Identities = 258/621 (41%), Positives = 349/621 (56%), Gaps = 44/621 (7%)

Query: 17  YTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDIDLAV 76
           YTA SI +LEGL  VR+RP MYIG TD R LHHLV E++DN++DEA+AG+   + + L +
Sbjct: 9   YTADSITILEGLSAVRKRPAMYIGSTDARGLHHLVYEVVDNSIDEAMAGFCSKVVVKLHL 68

Query: 77  DGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGISVVN 136
           D SV V DNGRGIP+D HP+   + A+EV++T LH+GGKF  +AYKVSGGLHGVG+S VN
Sbjct: 69  DNSVTVSDNGRGIPVDMHPK-EGRPAVEVVMTKLHAGGKFDNNAYKVSGGLHGVGVSCVN 127

Query: 137 ALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRRGTQVRFHPDAEIFGPRARFK 196
           ALS+ L V V RD   + Q + RG P   L+ +G A    GT VRF PD EIF    +F 
Sbjct: 128 ALSEWLEVRVKRDGQRYGQRYARGVPQEDLRVLG-ASEGHGTTVRFKPDEEIFETN-QFS 185

Query: 197 PALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLGHALAN--- 253
              L +     +YL RG+ I      E + + +G      F    G+  ++    +    
Sbjct: 186 YETLRKRFEELSYLNRGLEI------EFIDERSG--ESHTFFAEGGIRQFVKDLNSGETG 237

Query: 254 -RPLVGGRTFAGTANLPDDMGTVEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNAL 312
             P+V G           D   V++AL +    +    ++ N I T EGGTH AG + AL
Sbjct: 238 IHPIVAGEG-------KTDGVVVDFALQYNAGYKENVLTFANNIRTKEGGTHLAGFKTAL 290

Query: 313 TRGLRSF----AEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEAT 368
           TR +  +    A+++   KG  AL+ +DV  G   + S+ L  PQF+GQTK KL + E  
Sbjct: 291 TRAINGYVKGQADLTKKMKG-TALSGDDVREGLTAVVSVKLPQPQFEGQTKTKLGNSEIA 349

Query: 369 RLVEQALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKE-TSRKTATKKLRLPGK 427
            +V   + D  +      P    L++  A++ A  R   R+AKE   RK A     LPGK
Sbjct: 350 GIVAGIVYDRLNVHFEENPKDVRLIIDKAVDAARARDAARRAKELVRRKGALSDNALPGK 409

Query: 428 LSDCTRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQE 487
           L+DC       +ELF+VEGDSAGGSAKQ RD  TQA+LPLRGKILN      DK+  N+E
Sbjct: 410 LADCQSKDPALSELFIVEGDSAGGSAKQGRDPSTQAILPLRGKILNTERTRFDKMLANKE 469

Query: 488 LSDLAEALGCGT-RGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGH 546
           +  L  A+G G      D + LRY K+VIMTDADVDGAHI +LL+TFFFR+   L+ +G+
Sbjct: 470 VKALITAMGAGIGEDDTDYDKLRYHKIVIMTDADVDGAHIRTLLLTFFFRQYQKLIESGY 529

Query: 547 LYLAMPPLYRLTQGGTSVYARDDAHKDQLMKTVFKTKGKVEI-----SRFKGLG------ 595
           LY+A PPLYR        + +DDA  +  + T  +    VE+       FKG        
Sbjct: 530 LYIAQPPLYRAHNSRMERFIKDDAELNNFLLT--RVSEDVEVRTPGGCSFKGTDIVRLMR 587

Query: 596 --EMPPAQLRETTMAYATRQL 614
             E   A++R+   A  +R+L
Sbjct: 588 SIETVAARIRDVETAGISREL 608



 Score = 57.0 bits (136), Expect = 3e-12
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 575 LMKTVFKTKGK-VEISRFKGLGEMPPAQLRETTMAYATRQLLRVTVPGGKTEEDREDARE 633
           L + VF+   + + I R+KGLGEM P QL  TTM    R LL+V++         EDA E
Sbjct: 716 LQRMVFEEARRGLNIQRYKGLGEMNPEQLWVTTMNPENRTLLQVSI---------EDAEE 766

Query: 634 TAKLVEELMGRKPELRFRFIQENARFAENLDI 665
            +   E+LMG + E R  FI  NA   + LDI
Sbjct: 767 ASDAFEQLMGDRVEPRREFIVRNALAVQELDI 798