Pairwise Alignments

Query, 348 a.a., RNA methyltransferase TrmH, group 3 (NCBI) from Rhodospirillum rubrum S1H

Subject, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (343), Expect = 5e-37
 Identities = 83/234 (35%), Positives = 126/234 (53%), Gaps = 12/234 (5%)

Query: 118 LFGRHAVEAALQNPERKALRLLALAGAAEG--------LPKGGPTVEPADREAIEAVVPP 169
           ++G HAV A LQ    + +    L G  +         L + G +++   R+A++     
Sbjct: 6   IYGIHAVNAVLQRDPARFVEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKALDDKAE- 64

Query: 170 GAVHQGLALKVAP---LSQPTVEEIARIPGPSVVAILDQVSDPHNIGAVLRSAAAFGIRA 226
           GA HQGL  +V P   L++  +++I       ++ +LD V+DPHN+GA LR+A A G+ A
Sbjct: 65  GANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADAAGVAA 124

Query: 227 VVVQDRHSPEETGTLAKSASGTLERVPLVRAINLSQALDTFKEHGFWCAGLDASAETTLA 286
           V+V    S   T T++K A G  E VPLVR  NL++ +   +E G W  G    A   + 
Sbjct: 125 VIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEATHDIY 184

Query: 287 EAALPERCVVVLGSEGAGLRRLVRDHCDLLVKLAMDSGVESLNVSNAAAVTFYE 340
           ++ L     +V+G+EG G+RRL R+ CD L+K+ M   V SLNVS A  V  +E
Sbjct: 185 QSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCLFE 238