Pairwise Alignments

Query, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

 Score = 84.3 bits (207), Expect = 3e-20
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 13/158 (8%)

Query: 469 VELKDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIRERMS-------SVDID 521
           +EL  G    DD DH  N+R++  G+LME+ +R    ++ + I+ ++           I 
Sbjct: 324 IELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQ 383

Query: 522 TVMPHDLINAKP--AAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERA 579
             +  D++  +   A A      G + +SQ +D+T+ L+ ++  RR+ +     L+R + 
Sbjct: 384 AAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQP 439

Query: 580 GFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARV 617
            FE RD+H T +G+ICP ETPEGPN GL+ +LA   +V
Sbjct: 440 HFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477



 Score = 30.8 bits (68), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 30/91 (32%)

Query: 88  ECQQRGMTFAAPLKVTLRLLVWDVDEETGARSIRDIKEQDVYMGDMPLMTSN-------- 139
           E + R + ++APL + +   V + +EE      + +   +VY+G++P+M  +        
Sbjct: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEICHLCGK 131

Query: 140 ----------------GTFIINGTERVIVSQ 154
                           G FI+NG+E+ +V+Q
Sbjct: 132 SAEELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162